Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_L22
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 168 4e-42
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 129 2e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 112 2e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 92 3e-19
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 52 3e-07
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 43 2e-04
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 38 0.009
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 35 0.066
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.087
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 34 0.12
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 30 1.9
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.9
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 29 4.3
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 5.7
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 168 bits (408), Expect = 4e-42
Identities = 71/157 (45%), Positives = 111/157 (70%)
Frame = +1
Query: 148 YKCGGIDKRTIXKFXKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVT 327
Y G +DKRT+ K+ +EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 328 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 507
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 508 IVXVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 618
++ VNKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 129 bits (311), Expect = 2e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +1
Query: 208 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQ 387
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 112 bits (270), Expect = 2e-25
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +1
Query: 280 IDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 459
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 460 TREHALLAFTLGVKQLIVXVNKMD 531
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 92.3 bits (219), Expect = 3e-19
Identities = 42/49 (85%), Positives = 44/49 (89%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFXKEAQEM 210
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KF KE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 52.4 bits (120), Expect = 3e-07
Identities = 38/145 (26%), Positives = 66/145 (45%)
Frame = +1
Query: 97 VIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFXKEAQEMGKGSFKYAWVLDKLKAERERGI 276
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 277 TIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 456
++ ++ F + I+D PGH+DF ++ + D ++++ G E
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEE------- 118
Query: 457 QTREHALLAFTLGVKQLIVXVNKMD 531
QT + + + +IV +NKMD
Sbjct: 119 QTEKLVEVCRMRNI-PMIVFINKMD 142
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/117 (25%), Positives = 52/117 (44%)
Frame = +1
Query: 247 KLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 426
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 427 EFEAGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKKEVSSYI 597
QT EH + +K +++ NK+D + ++ ++++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 37.5 bits (83), Expect = 0.009
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +1
Query: 64 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIXKFXKEAQEMGKGSFKYAW 237
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 238 VLDKLKAERERGITIDIALWKFETXK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 414
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 415 AGTG 426
+G
Sbjct: 132 CVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.9 bits (79), Expect = 0.029
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Frame = +1
Query: 79 THINIVVIGHVDSGKSTTTGHLIY----KCGGIDKRTIXKFXKEAQEMGKGSFKYAWVLD 246
T I + V+G+V+SGKST G L Y G + + + E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 247 KLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 420
E A E +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 421 TG 426
G
Sbjct: 231 AG 232
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 35.9 bits (79), Expect = 0.029
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +1
Query: 88 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFXKEAQEMGKGSFKYAWVLDKLKAERE 267
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 268 RGITI 282
RGIT+
Sbjct: 1987 RGITV 1991
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 34.7 bits (76), Expect = 0.066
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = +1
Query: 271 GITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 450
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 451 NGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFEEIKKEVSS 591
QT+E A GV +I +NK+D P + P + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.087
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1
Query: 322 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 501
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 502 QLIVXVNKMD 531
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 33.9 bits (74), Expect = 0.12
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
Frame = +1
Query: 61 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIXKFXKEAQEMGKGSFKYA 234
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 235 WVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 414
+ + L R G D+ +T++D PGH IK +I G A +I
Sbjct: 88 -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGE 128
Query: 415 AGTGEFEAGISKNGQTR 465
GT E G ++G+ +
Sbjct: 129 CGT--IEGGFGQSGKVK 143
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFLGLLXELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFLGLLXELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = -2
Query: 366 VLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFLGLLXE 187
V I ++ + N V + + D TT+T S YPS+ + +F
Sbjct: 316 VASSIQLNITSNTTVEVNDTLRTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSV 375
Query: 186 LXDGTFVNTTTFVDQVTS 133
+ D T N TT V +++
Sbjct: 376 VFDSTTPNATTLVPSISA 393
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFLGLLXELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 328 IIDAPGHRDFIKNMITGTSQADCAVLIV 411
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFLGLLXELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFLGLLXELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 273 TTLTLSL*FVQYPSIFEGSFTHFLGLLXELXDGTFVNTTTFVDQVTS 133
TT+T S YPS+ + +F + D T N TT V +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/78 (21%), Positives = 33/78 (42%)
Frame = -2
Query: 366 VLDEISVSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSIFEGSFTHFLGLLXE 187
V I ++ + N V + +++ TT+T S YPS+ + + +F
Sbjct: 1009 VASSIQLNITSNTTMAVNDTLRTASTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSV 1068
Query: 186 LXDGTFVNTTTFVDQVTS 133
+ D T N T V +++
Sbjct: 1069 VFDSTTPNATRLVPSISA 1086
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,918,370
Number of Sequences: 59808
Number of extensions: 368485
Number of successful extensions: 887
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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