Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L20
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.4  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    27   2.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.1  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   4.1  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.2  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.5  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
 Frame = +1

Query: 334 QPIGSIETSFQNKRGVPRQPSVMKNAXGTVVIDTSVFNNPEHALSGLXEFSH------MW 495
           Q + S E   +NK+ + +Q S + ++ G  + D     + EH    L   ++      + 
Sbjct: 68  QQLASSERKTKNKKRLEKQSSAIADSIGESLDDPQTVYD-EHLFDILSARTNKRGQINLN 126

Query: 496 IIFHFHMTESTNAPAKVAPPRLCGGRQGVFSTRSPHRP 609
            + +F  T  TN+ A  APPR   G    +   S H P
Sbjct: 127 HLLNFQFTPRTNSNAFSAPPRRSRG-YNTYGQGSGHHP 163


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 349 IETSFQNKRGVPRQPSVMKNAXGTVVIDTSVFNNPEHALSGLXEFSHMWIIFHFHMTES- 525
           IE +  N    P QPS +K + G+++  ++   +PE++ +G+   +   +        S 
Sbjct: 23  IEETSTNGSSQPSQPSNIKLSIGSILESSNDNGDPEYSENGMGNMNMNTLPMATSTPMSY 82

Query: 526 TNAPAKVAPPRLCGGRQGV 582
           T  P++   P     R+GV
Sbjct: 83  TKQPSEAKYPNSVWERKGV 101


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +1

Query: 379  VPRQPSVMKNAXGTVVIDTSVFNNPEHALSGLXEFSHMWIIFH 507
            +  QPS+MK A   +V+D+ +          +   +H W + H
Sbjct: 1288 ITHQPSLMKLADRIIVMDSGIVKESGSFDELMNRHTHFWKLIH 1330


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 345 SNRLIMYVIIRPFCLYII 292
           +NR + YVI+  FCLY I
Sbjct: 292 ANRHLAYVIVAGFCLYFI 309


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +3

Query: 147 LARTEIKNL---RQQLTSLKHEHQKEIKL 224
           LAR E+KNL   R  + S++HE  +++ L
Sbjct: 241 LARVELKNLSNVRNVVNSIRHEVDRQVSL 269


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +2

Query: 134 ESNSFSSYRNKKSQATIDVSEARTPEGDK 220
           ++NS ++  NK+S++ + +S   + EGD+
Sbjct: 660 QNNSTATSENKRSESELTMSNVLSNEGDR 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,960
Number of Sequences: 5004
Number of extensions: 51525
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)