Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L20
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0198 + 15528576-15528645,15528746-15528893,15529182-155293...    89   3e-18
03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102...    29   3.2  
03_06_0777 + 36181095-36181311,36181444-36181530,36181785-361827...    29   4.3  
07_01_0349 + 2521006-2522439                                           28   7.5  

>09_04_0198 +
           15528576-15528645,15528746-15528893,15529182-15529377,
           15529512-15529604,15530403-15530462,15530563-15530637,
           15531072-15531152,15531262-15531603,15531967-15531999
          Length = 365

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 10/105 (9%)
 Frame = +1

Query: 370 KRGVPRQPSVMKNAXGTVVIDTSVFNNPEHALSGLXEFSHMWIIFHFHMTEST----NAP 537
           + G PRQP V+  A  TV++D +    P  AL GL ++SH WI++ FH+        N P
Sbjct: 73  RNGTPRQPLVVPLARATVMLDPA--RVPAEALEGLADYSHCWILYVFHLNTDLDKMWNDP 130

Query: 538 A------KVAPPRLCGGRQGVFSTRSPHRPCPIGLSLVKIHSIEG 654
           A      KV  PRL GG+ GV +TRSPHRP PIGLS+ K+ +++G
Sbjct: 131 ARSKLKAKVRVPRLKGGKMGVLATRSPHRPNPIGLSVAKVEAVDG 175


>03_04_0127 -
           17508808-17509029,17509195-17509938,17510004-17510242,
           17510334-17510436,17510666-17510770,17510838-17510906,
           17510998-17511402,17512048-17512156,17512240-17512295
          Length = 683

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 424 VIDTSVFNNPEHALSGLXEFSHMWIIFHFHMTESTNAPAKVAPPRLCGGRQG-VFSTRSP 600
           ++   V + P   L  L   +   +     + EST +  +V       GR G VFS   P
Sbjct: 23  LLSVKVASRPSEILPKLRSLAGFCLSEMIELYESTTSRHRVCHEEHAVGRAGSVFSIWCP 82

Query: 601 HRPCPIGLSLVKIHSIE 651
              C I L ++K+H ++
Sbjct: 83  LPDCLIFLPILKLHPLD 99


>03_06_0777 +
           36181095-36181311,36181444-36181530,36181785-36182725,
           36182956-36183006,36183240-36183328,36184975-36185078,
           36185179-36185278,36185396-36185471,36185556-36185670,
           36185755-36186286,36187032-36187527
          Length = 935

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 126 YYKNQIALARTEIKNLRQQLTSLKHEHQKEIKLIKAA 236
           + KN+I   +TEI+N RQ +  L++E + E K +  A
Sbjct: 734 FEKNRIEKLQTEIENDRQAVVQLQYELEVERKALSMA 770


>07_01_0349 + 2521006-2522439
          Length = 477

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 605 LWGERVENTPCLPPHNLGGATLAGAFVLSVMWKW 504
           LW  R ++ P LPP  L  AT AG     ++  W
Sbjct: 311 LWSLREDSWPLLPPEFLDRATKAGDSAAGLVVAW 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,469,065
Number of Sequences: 37544
Number of extensions: 316609
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)