Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L20
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   2.5  
SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)              29   3.3  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)                  28   5.8  
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)               28   5.8  
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_28543| Best HMM Match : DUF1337 (HMM E-Value=2.4)                   28   7.6  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     28   7.6  

>SB_32300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 114 DHS---EYYKNQIALARTEIKNLRQQLTSLKHEHQKEIKLIKAALNSLRL 254
           DHS   +   ++ A AR ++  L+QQL  +K +H  EI  +   + SLRL
Sbjct: 238 DHSKALDIAASRSASARDDLDQLQQQLKHIKEQHITEISAMDDKMKSLRL 287


>SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 684

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 488 ICG*-YSTST*QKVQMHQLKLPHQDCVEEGKVYSPRVHPTDLVR-LGCHL 631
           ICG  YST   +K  M    +   +C E GK++S   +P+DL R   CHL
Sbjct: 315 ICGMSYSTPGKRKRHMKDHDVNRHECAECGKLFS---YPSDLKRHAACHL 361


>SB_6892| Best HMM Match : TSP_3 (HMM E-Value=2.94273e-44)
          Length = 749

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 415 GTVVIDTSVFNNPEHALSGLXEFSHMWIIFHFHMTESTNAPAKVAPPRLCGGRQGV-FST 591
           GT  I  S+ ++    + G     + +++     T++ N P   + PR C GRQG+    
Sbjct: 649 GTFFISDSLDDDFAGIVFGYQSNRNFYLVSWKQKTQTYNLPTNASYPRSC-GRQGISLMV 707

Query: 592 RSPHRPCPIGLSLVK 636
               RP   G +L++
Sbjct: 708 TQSTRPSSCGTTLLR 722


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 96   IKHEMADHSEYYKNQIALARTEIKNLRQQLTSLKHEHQKEIKLIKAALN 242
            +K+++    E   N+I   +  +  + + +  LK EH KE+    A  N
Sbjct: 1791 VKNQLTTQLESKVNEITRLKANLGEVEKNMEELKSEHSKELARAAAEFN 1839


>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
          Length = 367

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +3

Query: 99  KHEMADHSEYYKNQIALARTEIKNLRQQLTSLKHEHQKEIKLIKAAL 239
           KH + DH++  K +  + R E+  L ++  +L HEH++E++    AL
Sbjct: 272 KHCLDDHTQKIKEENKVLRHELLMLIRRTRAL-HEHREELQAQHKAL 317


>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
          Length = 882

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 322 DIHYQPIG-SIETSFQNKRGVPRQPSVMKNAXGTVVIDTSVFNNPEHALSGLXEFSHMWI 498
           +++++  G + + +FQ     P + +V  +  G V+I+   F    H+ S + EF H   
Sbjct: 500 NVYFKQCGDNCDETFQGTATFPWENTV-HSVLGGVLINPGYFGQKGHSNSIIHEFGHALG 558

Query: 499 IFHFH 513
           ++H H
Sbjct: 559 LWHVH 563


>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 514 MTESTNAPAKVAPPRLCGGRQGVFSTRSP 600
           +T S + P KV PP + G R   + T+SP
Sbjct: 284 VTNSVSVPGKVDPPSMYGRRVTSYRTQSP 312


>SB_28543| Best HMM Match : DUF1337 (HMM E-Value=2.4)
          Length = 238

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 108 MADHSEYYKNQIALARTEIKNLRQQLTSLKHEHQKE-----IKLIKAALNSLR 251
           + D    YKN + + R +I+    Q   +KH +++E     I+L+K  LN ++
Sbjct: 133 LEDERIRYKNNLQIDREKIREEITQELKIKHANERESLLQKIELLKEGLNDMK 185


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 123 EYYKNQIALARTEIKNLRQQLTSLKHEHQKEIKLIK 230
           EY K    +A    ++L QQ   L+ EH+KE+++ +
Sbjct: 588 EYAKWSTKMALKNAQSLEQQRAELQFEHEKEMEVFR 623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,466
Number of Sequences: 59808
Number of extensions: 380633
Number of successful extensions: 896
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)