Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L20
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.48 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.48 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.9  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 348 NRNIISKQTRCSSATFCYEECXGNC 422
           NR++I  QT C+      + C GNC
Sbjct: 222 NRDLIIVQTGCTITRVIPQVCSGNC 246


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 348 NRNIISKQTRCSSATFCYEECXGNC 422
           NR++I  QT C+      + C GNC
Sbjct: 222 NRDLIIVQTGCTITRVIPQVCSGNC 246


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 525 TFCHVEVEYYP 493
           +FC ++VEY+P
Sbjct: 143 SFCEIDVEYFP 153


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 457 HALSGLXEFSHMWIIFHFHMTESTN 531
           HA+S + EFS    +   H  E +N
Sbjct: 258 HAMSSIAEFSVSTEVLQDHTLEKSN 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,474
Number of Sequences: 438
Number of extensions: 3756
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)