Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L20
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28020.1 68417.m04019 expressed protein contains Pfam PF01980...    99   2e-21
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    31   0.51 
At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein ...    28   4.7  
At5g64870.1 68418.m08160 expressed protein                             27   8.2  

>At4g28020.1 68417.m04019 expressed protein contains Pfam PF01980:
           Uncharacterised protein family
          Length = 351

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 10/116 (8%)
 Frame = +1

Query: 334 QPIGSIETSFQNKRGVPRQPSVMKNAXGTVVIDTSVFNNPEHALSGLXEFSHMWIIFHFH 513
           +PIG+I++ F  + G PRQP ++  A   ++ D ++   P  +L GL E+SH WI++ FH
Sbjct: 92  RPIGTIQSCFSTRNGTPRQPLLVSLARACLIFDPALV--PPASLEGLEEYSHCWILYVFH 149

Query: 514 MT----------ESTNAPAKVAPPRLCGGRQGVFSTRSPHRPCPIGLSLVKIHSIE 651
           +             +   AKV  PRL G R+GVF+TRSPHRPCPIGL++ K+  I+
Sbjct: 150 LNTDIEKLWRKPSQSKLKAKVRVPRLNGERKGVFATRSPHRPCPIGLTVAKVEEIQ 205


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +3

Query: 105 EMADHSEYYKNQIALARTEIKNLRQQLTSLKHEHQKEIKLIKAALNS 245
           E+ +H E   N++    TE+ +LR +  SL+ E+   +KLI+ + +S
Sbjct: 91  ELNEHYELCLNRLQSLMTELDSLRHENDSLRFENSDLLKLIRISTSS 137


>At5g14140.1 68418.m01654 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 427

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 99  KHEMADHSEYYKN-QIALARTEIKNLRQQLTSLKHEHQKE 215
           KH+     E++K  Q++  R E K  RQ ++ LKHE  KE
Sbjct: 233 KHKFPTTFEFFKKTQLSKKRRE-KLQRQHVSKLKHEEDKE 271


>At5g64870.1 68418.m08160 expressed protein
          Length = 479

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +3

Query: 54  KYRSYPRTTILKA*IKHEMADHSEYYKNQIALARTEIKNLRQQLTSLKHEHQKEIKLIKA 233
           K  +  RT  LKA     ++  S  Y+ ++  A  E+ N ++Q  ++ +E QK+ +  KA
Sbjct: 285 KMNALTRTEKLKA---EFLSKASVEYETKVQEANWELYNKQKQAEAVLYEKQKQAEATKA 341

Query: 234 ALNS 245
           A ++
Sbjct: 342 AADA 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,573,517
Number of Sequences: 28952
Number of extensions: 263424
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)