Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L19
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              30   0.78 
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                30   0.78 
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)                       27   5.5  
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_54208| Best HMM Match : fn3 (HMM E-Value=0)                         27   7.3  
SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)                   27   7.3  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_48017| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)                 26   9.6  
SB_37642| Best HMM Match : fn3 (HMM E-Value=0)                         26   9.6  
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               26   9.6  

>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
 Frame = +3

Query: 114 WVC---IXSAAILVAAGAWLL------PATKWVCXTVSCTYLFSFK*L*ILFQFVYYCIM 266
           W+C     S +ILVA G+ +L       +  W+C T SC  LF +  L + + F+   I+
Sbjct: 203 WICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQLDLQYLFMSPSIL 261

Query: 267 VKL 275
           V L
Sbjct: 262 VAL 264


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
 Frame = +3

Query: 114 WVC---IXSAAILVAAGAWLL------PATKWVCXTVSCTYLFSFK*L*ILFQFVYYCIM 266
           W+C     S +ILVA G+ +L       +  W+C T SC  LF +  L + + F+   I+
Sbjct: 141 WICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQLDLQYLFMSPSIL 199

Query: 267 VKL 275
           V L
Sbjct: 200 VAL 202



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +3

Query: 129 SAAILVAAGAWLL------PATKWVCXTVSCTYLFSFK*L*ILFQFVYYCIMVKLEFQLY 290
           S +ILVA G+ +L       +  W+C T SC  LF +  L + + F+   I+V L  ++ 
Sbjct: 216 SPSILVAVGSAVLIHVAFYSSRTWICSTYSCRLLF-YSQLDLQYLFISPSILVALGSEVI 274

Query: 291 SY 296
            Y
Sbjct: 275 IY 276


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 142  WSPLGRGCCQLQNGFVXRYHVPIYLVLSNCK 234
            WSP+     +L+NG +  YH+ +Y +  N K
Sbjct: 2182 WSPI---LPELENGIITGYHINVYELSGNLK 2209


>SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)
          Length = 437

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 158 RPSGDQDGGRXDADPRETQWDCIRPGTKWHWFSSGATPHKHVTTRN 21
           RP+G    GR D +   T  +  RP T + WF+S     ++V  RN
Sbjct: 359 RPAGQ---GRDDPNRNPTLDEPQRPSTSFLWFASPLKTLRYVIWRN 401


>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 40  LCGVAPELNQ---CHFVPGRIQSHCVSRGSASXRPPSWSPLGRGCCQLQNGFV 189
           LCG    ++       +   ++ +  +RG AS R   + P+G G  +  NG +
Sbjct: 839 LCGTPSYIHSDRGASLISHELKEYLSARGIASSRTTPYHPIGNGQVERYNGII 891


>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1292

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 139 SWSPLGRGCCQLQNGFVXRYHVPIYLVLSNCK 234
           +W P+ +   Q QNG +  YHV +Y +  + K
Sbjct: 526 TWQPVAK---QQQNGLITWYHVVLYDITKSVK 554


>SB_36817| Best HMM Match : rve (HMM E-Value=6.2e-36)
          Length = 924

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +1

Query: 40  LCGVAPELNQ---CHFVPGRIQSHCVSRGSASXRPPSWSPLGRGCCQLQNGFV 189
           LCG    ++       +   ++ +  +RG AS R   + P+G G  +  NG +
Sbjct: 685 LCGTPSYIHSDRGASLISHELKEYLSARGIASSRTTPYHPIGNGQVERYNGII 737


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 72  PFCARSDTVPLRFAWVCIXSAAILVAA 152
           P+C    TV L F+W C+ S    + A
Sbjct: 903 PWCCVFHTVDLSFSWCCLVSRGCCLGA 929


>SB_48017| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)
          Length = 249

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 99  PLRFAWVCIXSAAILVAAGAWLLPATK-WVCXTVSCTYLFSFK 224
           P R+A V    +  L+ AGAW++P  +  +  T  CT  F  +
Sbjct: 122 PYRYANVMTTRSVRLLIAGAWVIPMVECLIPFTSVCTPPFEMR 164


>SB_37642| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 500

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 67  QCHFVPGRIQSHCVSRGSASXR-PPSWSPLGRGCCQLQNGFVXRYHVPIY 213
           QC    GR  +    +G+       +W+P+     +L+NG +  YHV +Y
Sbjct: 384 QCAAPDGRPVNITTDKGTGLTNLAVTWAPM---TTELENGIILGYHVNVY 430


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 99  PLRFAWVCIXSAAILVAAGAWLLPATK-WVCXTVSCTYLFSFK 224
           P R+A V    +  L+ AGAW++P  +  +  T  CT  F  +
Sbjct: 286 PYRYANVMTTRSVRLLIAGAWVIPMVECLIPFTSVCTPPFEMR 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,754,089
Number of Sequences: 59808
Number of extensions: 203068
Number of successful extensions: 692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)