Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L18
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical ...    28   5.0  
AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical ...    28   5.0  

>Z98860-2|CAB11545.1|  337|Caenorhabditis elegans Hypothetical
           protein Y26G10.2 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 307 PKNHSPRCYFTVYSLIFQKNCKYLXKFCFINFHT 206
           PKN     +F V+  IF   C++L  F  +NF+T
Sbjct: 46  PKNFGSLKWFLVFH-IFSITCQWLCSFLLVNFYT 78


>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = -2

Query: 173 IFQTITHNLTLLF------NHLKFCHKFFIITFHVFCFMKFV*PNYXTNSSNASI 27
           IF +I  +LT LF      N+L FC+  F+ +    CF  F   N  T++S+ ++
Sbjct: 361 IFGSILPSLTTLFDKQKTSNNLNFCYLNFLCSLEFLCFKSF---NSMTSASSLAV 412


>AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical
           protein C17E7.9a protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 568 VLWILFVIAYSFYVLTCGFLSSKFNVLVPLGEFSK*QIINVIQHSVSE 425
           ++WI+   A +F V+TC   +S+  VL    +  +  + N+ + +V E
Sbjct: 204 IIWIIVTFAIAFCVMTCSLWNSEILVLKKTEDSRQFGMQNLARENVHE 251


>AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical
           protein C17E7.9b protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 568 VLWILFVIAYSFYVLTCGFLSSKFNVLVPLGEFSK*QIINVIQHSVSE 425
           ++WI+   A +F V+TC   +S+  VL    +  +  + N+ + +V E
Sbjct: 176 IIWIIVTFAIAFCVMTCSLWNSEILVLKKTEDSRQFGMQNLARENVHE 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,639,898
Number of Sequences: 27780
Number of extensions: 270277
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)