Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L18
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47770.1 68416.m05204 ABC transporter family protein AbcA, Di...    29   3.6  
At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    29   3.6  
At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containi...    28   4.7  
At5g45780.1 68418.m05630 leucine-rich repeat transmembrane prote...    28   4.7  
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    28   6.2  
At1g61750.1 68414.m06964 expressed protein contains Pfam profile...    27   8.2  
At1g21590.1 68414.m02699 protein kinase family protein contains ...    27   8.2  

>At3g47770.1 68416.m05204 ABC transporter family protein AbcA,
           Dictyostelium discoideum, U66526
          Length = 900

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 510 FRVNLMFWFLWVNFQNSKLSMLFNIQSQSNSFVTRNVL*KKLYTFA*SLYG 358
           + +  MF+FL++N Q   +S+ F + S  +  VT +V+   +Y F   L G
Sbjct: 391 YTIQFMFYFLYINLQ---ISIAFLVSSAFSKAVTASVV-AYIYVFGSGLLG 437


>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 634 WVFYQLRDKTHTLHIVLQS 578
           WV+ QL D TH LH V+ S
Sbjct: 168 WVYSQLEDNTHLLHGVIHS 186


>At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 982

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 412 YSKRALKKTLYICLKLVWNKIIQKLYFIFKCLKIIPKNHSPRCYFTVYSLIFQKNC 245
           Y K  + K + + ++++ N I+      F  LK++PK H  +    +   I    C
Sbjct: 389 YKKGGMDKAVDLLMRMLDNGIVPDHITYFVLLKMLPKCHELKYAMVILQSILDNGC 444


>At5g45780.1 68418.m05630 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 614

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 534 FMF*LAAFFRVNLMFWFLWVNFQNSKLS 451
           F F +   F ++LMF F WV +  S+LS
Sbjct: 243 FAFGIVVAFIISLMFLFFWVLWHRSRLS 270


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 640 VLWVFYQLRDKTHTLHIVLQSYRTVLWILFVIAYSFY 530
           +LW++Y +  K   + I + S+  V+ I+++  + FY
Sbjct: 56  MLWMYYAMIKKDAMMLITINSFAFVVQIVYISLFFFY 92


>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
           PF01657 domain of unknown function
          Length = 352

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 337 YFIFKCLKIIPKNHSPRCYFTVYSLIFQKNCKYLXKFCFI 218
           Y  ++CLK         CY   ++L++  NC    K  F+
Sbjct: 206 YDCYRCLKSAYNETKDCCYGKRFALVYSSNCMLTYKATFL 245


>At1g21590.1 68414.m02699 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 756

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 413 LLETCFEKNFIHLLKACMEQNNTKIIFHF 327
           ++ T   KN I LL  C E NN  +++++
Sbjct: 455 IITTLHHKNVISLLGYCFENNNLLLVYNY 483


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,906
Number of Sequences: 28952
Number of extensions: 223328
Number of successful extensions: 486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)