Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L17
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.0  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   5.3  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   5.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.0  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 289 SFSEFSMKFTLDT*AAAYIRSVNTSYSMXSNSSDVKS 179
           + S  S+  +  + + +YI S ++SY + SNSSD  S
Sbjct: 563 ALSSNSLSSSTSSASTSYIPSASSSYEVASNSSDYYS 599


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 358 RYVRPIRLLSCFHLPVGVSVILFSFSEFSMKF-TLDT*AAAYIRSVNTSYSMXSNSSDVK 182
           R +  I+ L CF +  G+S   + FS     F T+D  A   I +V T++    +   V 
Sbjct: 388 RSINAIQQLPCFLIDTGISAKEYDFSYDGTVFATVDKDALIKIYTVPTTFPSTPDKRPVP 447

Query: 181 S 179
           S
Sbjct: 448 S 448


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 346 PIRLLSCFHLPVG-VSVILFSFS 281
           PI LL+C + P+G  +V++ SFS
Sbjct: 307 PIELLNCHNAPIGRCNVLVLSFS 329


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 505 VFLVDQCYISAQLYLE*PXCIYPFYGAEHTRTLVLSFLTXSLPLCFVKF 359
           +F +D   I    Y   P   Y    A +T    L+FL+ +LP+ +V+F
Sbjct: 692 IFKLDVLSILIAPYKSLPRSRYMGIQAINTNKCKLAFLSGNLPVSYVRF 740


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,138
Number of Sequences: 5004
Number of extensions: 39070
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)