Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L17
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z79757-6|CAB02127.1|  350|Caenorhabditis elegans Hypothetical
           protein F55B12.6 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 27/113 (23%), Positives = 47/113 (41%)
 Frame = -1

Query: 604 IKWSFAAGYRSPVCMFEDSTSPRSIXNIHTVVTVFLVDQCYISAQLYLE*PXCIYPFYGA 425
           I + F+  + S +     + SP+ + N   ++  F    C+  A  +      + PF   
Sbjct: 14  ISFVFSICFNSILIFLIITQSPKKMGNYRYLMIYF---SCF--AMFFSTIDVIVAPFIHT 68

Query: 424 EHTRTLVLSFLTXSLPLCFVKFRYVRPIRLLSCFHLPVGVSVILFSFSEFSMK 266
             T   VL   + S  +  V  +YV  I L SCF + +    I F F  F+++
Sbjct: 69  HGTSATVLMRRSDSDTI--VNLQYVLLILLCSCFGVTITFFAIHFVFRYFALE 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,139,206
Number of Sequences: 27780
Number of extensions: 221000
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)