Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L17
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    28   4.5  
At2g10110.1 68415.m01050 hypothetical protein                          28   6.0  

>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 452 RLLQVELCRNIALIHEENGYDCMDVXNRPRGCAVFKHAYRGTVPCGE*PFDISENQQG 625
           ++L V +   + L ++   ++C     R + C  FK  +   +PCG+ P  I  +Q+G
Sbjct: 416 KILDVGMNCILDLTNQRTPWECAKFFLRKQSCPNFKSFFY--LPCGKDPHRIKPDQEG 471


>At2g10110.1 68415.m01050 hypothetical protein
          Length = 169

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 474 HSSTWSSLVVYIHST 430
           HS+TWSS  + IHST
Sbjct: 24  HSTTWSSTTIIIHST 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,196,747
Number of Sequences: 28952
Number of extensions: 196307
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)