Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L13
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   4.2  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.6  

>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 231 HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 133
           HIR +L R Y FS       ++ S+++NN   I
Sbjct: 256 HIRVLLERDYKFSNDSYFTFYEGSSWHNNDAGI 288


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 505 YSPARHNPVVGXSRRRHQQDL 443
           Y  A HNP V    RRH ++L
Sbjct: 87  YKAAMHNPKVSQKGRRHAKEL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,871
Number of Sequences: 5004
Number of extensions: 35843
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)