Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L13
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   62   3e-10
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_58081| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/67 (40%), Positives = 39/67 (58%)
 Frame = +2

Query: 347 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRXPDNWIXXXXXXXXXXXXX 526
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+             
Sbjct: 83  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGGIEPGEEPK 142

Query: 527 XTAMREV 547
            TA+REV
Sbjct: 143 ETAIREV 149


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/67 (40%), Positives = 39/67 (58%)
 Frame = +2

Query: 347 MVKEKPNSIRIYDDEGFRRRAACICVRSDAETEVLLVTSSRXPDNWIXXXXXXXXXXXXX 526
           M+K      R YD++G+ +RA C+C R++ E EVLLV+SS+ PD W+             
Sbjct: 48  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGGIEPGEEPK 107

Query: 527 XTAMREV 547
            TA+REV
Sbjct: 108 ETAIREV 114


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -1

Query: 429 ERTQIHAARRLKPSSSYILIELGFSFTIFVCKHVNTNETNDHKINTDIN*KEKL*N 262
           +RT     R ++ +   +++  GF   +  CK  N +E N+ K N   N ++K  N
Sbjct: 53  DRTSTEPERSVRNALKAMILVYGFLQVLSHCKKQNASENNESKTNKSTNERKKCGN 108


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -1

Query: 333 HVNTNETNDHKINTDIN*KEKL*NEQNFLMINKRHIRCILCRTYPFSTI-KLHNVHKKSN 157
           H+     N+H + T IN    +    N  M+  RH   ++ R +    + ++HN +  + 
Sbjct: 44  HIMVTRINNHNMVTRINNHNMVTRIHNHNMVTSRHNHIMVTRAHNHIMVTRIHNHNMVTR 103

Query: 156 YNNNKTTIR 130
            +N+    R
Sbjct: 104 IHNHNMVTR 112


>SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 252 FLMINKRHIRC---ILCRTYPFSTIKLHNVHKKSNYNN-NKTT 136
           +  +N+R+ R    + CRT  F  +K  N H + +YNN N+T+
Sbjct: 325 YAALNERYARSFTRLFCRT--FKNLKSFNAHAEPSYNNVNQTS 365


>SB_58081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 300 FCDRSFRSCLRVCKQKW*RRSLIR*GYMTTRVLGDG 407
           FC      C   CK KW   + +R  Y TT+ +  G
Sbjct: 40  FCPHKLSECCSSCKSKW--TANLRYQYRTTQTISSG 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,037,856
Number of Sequences: 59808
Number of extensions: 273785
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)