Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L12
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.58 
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    26   4.1  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   7.2  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   7.2  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   9.5  

>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 171 ACRPSCAQHQPSPASGPACRDGTTPPRTTQRK 76
           +C P+  +H PS AS  A   GTT P++ + +
Sbjct: 160 SCLPAPDRHTPSSASSRASETGTTSPQSMRNQ 191


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 200 YLRWKDRRETQVIRKRVCHEQLQ----LRTQRYVAQDQPXPVSWIRWHPSLLNTEXTIIN 367
           Y+  +DR+    I    C+E+LQ    L  +R ++++Q   V + RW     NT+   I 
Sbjct: 52  YIEERDRKMKYEIE---CNERLQGWKKLAIEREISEEQSGEVQFPRWIDEWANTKLGGIF 108

Query: 368 HVVYSR 385
             ++S+
Sbjct: 109 ERIFSK 114


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +2

Query: 200 YLRWKDRRETQVIRKRVCHEQLQ----LRTQRYVAQDQPXPVSWIRWHPSLLNTEXTIIN 367
           Y+  +DR+    I    C+E+LQ    L  +R ++++Q   V + RW     NT+   I 
Sbjct: 52  YIEERDRKMKYEIE---CNERLQGWKKLAIEREISEEQSGEVQFPRWIDEWANTKLGGIF 108

Query: 368 HVVYSR 385
             ++S+
Sbjct: 109 ERIFSK 114


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 129 KQVKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNC 272
           K    D+ + K   +D T  + +PI   +         NE + NN NC
Sbjct: 69  KSSSHDSFKAKPKNYDSTSNSNEPISFNEPDSSNSHHNNESICNNDNC 116


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 159 SCAQHQPSPASGPACRDGTTPPRTTQRKHKK 67
           S    +P PA  P   +GT  P++T+R H++
Sbjct: 907 SIKPQKPEPALKPV--EGTADPKSTKRNHQE 935


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 215 DRRETQVIR--KRVCHEQLQLRTQRYVAQDQPXPVSWIR 325
           DRR  Q+    K+VC + LQ+   R  A D+     W++
Sbjct: 875 DRRHVQLFADSKKVCQKWLQVMNSRSFALDRGTEKLWLQ 913


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -3

Query: 187 ALVQSCMQAFLRSASAFTCFRSSLSGRHDTATNNTAKAQENNGLHSWNE 41
           A+V++C  + +R  S+ T   S L    D+ T+N  +++    ++ W E
Sbjct: 72  AIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAE 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,284
Number of Sequences: 5004
Number of extensions: 45875
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)