Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L12
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    28   5.6  
06_01_0008 + 141405-142421                                             28   7.4  
11_08_0077 - 28180918-28183269,28183553-28184608                       27   9.8  
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626...    27   9.8  
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099...    27   9.8  

>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 141 ADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQ 305
           +D + ++AC  +C+   L   C      +P S G+  + N  NC   D   ++ Q
Sbjct: 724 SDQQSQQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFDETVEVHQ 778


>06_01_0008 + 141405-142421
          Length = 338

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 174 HACRPSCAQHQPS-PASGPACRDGTTPPRTTQRKHK 70
           H   P+   H+P+ PAS  A      PPR  +R+ +
Sbjct: 252 HHAHPTLGSHRPAAPASASASPSPAPPPRLAERRFR 287


>11_08_0077 - 28180918-28183269,28183553-28184608
          Length = 1135

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 223 SPVFPAQIGSRLALVQSCMQAFLRSASAFTCFRSSLSGRHDTATNNTAKAQE 68
           +P+F   IGSR+  + + + A  +SA+AF+  +  L    D A    + A +
Sbjct: 114 NPLFAHDIGSRIKALNTRLDAICKSAAAFSFLK--LEAYEDMAAPRRSSATD 163


>10_08_0683 -
           19860777-19861070,19861677-19861874,19862498-19862659,
           19862763-19862911,19863089-19863236,19863317-19863385,
           19863471-19863719,19863937-19864131,19864444-19864560,
           19864978-19866537
          Length = 1046

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 132 ASGPACRDGTTPPRTTQRKHKKIMVFI 52
           A  P+  + T+ P+   RKH++ MV++
Sbjct: 870 ADSPSTSNSTSTPQEQARKHRRFMVYV 896


>10_08_0262 +
           16307003-16308416,16309501-16309595,16309954-16309959,
           16310567-16310671
          Length = 539

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 197 PYLRWKDRRETQVIRKRVCHEQLQLRTQRYVAQDQPXPV-SWIRW 328
           P+L W  RRE + +++ + H + +  T R      P PV SW  W
Sbjct: 310 PFLEWLRRRECKDLKRTLVHGRWKATTWR-----MPIPVTSWDDW 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,206,102
Number of Sequences: 37544
Number of extensions: 285166
Number of successful extensions: 884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)