Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L12
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    33   0.23 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    33   0.23 
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    31   0.71 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    31   0.71 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    29   2.9  
AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    29   2.9  
AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical ...    28   6.6  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 135 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQXQC 314
           VK D   +  C + C    + P+CA   GE   +F NEC M   +CE K  ++   Q  C
Sbjct: 383 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 437


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 135 VKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQXQC 314
           VK D   +  C + C    + P+CA   GE   +F NEC M   +CE K  ++   Q  C
Sbjct: 391 VKPDRTAECECPNRCEDV-MRPVCA-TNGE---TFDNECEMKKKSCETKSMIKVKHQGTC 445


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 210 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQXQCPGSDGIRLS 341
           G TG K +   NEC+ NN  CEH + +  I    C    G  LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 210 GKTGEKPKSFGNECVMNNYNCEHKDTLRKISQXQCPGSDGIRLS 341
           G TG K +   NEC+ NN  CEH + +  I    C    G  LS
Sbjct: 107 GFTGAKCQYDANECMANNGGCEH-ECVNTIGTYYCRCWPGFELS 149


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = +3

Query: 72  CAFAVLFVAVSCRPDKLDLKQVKADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNEC 251
           C FA  F  +  +   L L ++       K C H+CT    DP+C          + N C
Sbjct: 85  CHFAQ-FQCIMKKSMGLSLTKLHMGRCSSKDCNHNCTNTEFDPVC----DTNGSVYRNLC 139

Query: 252 VMNNYNCE 275
           V     CE
Sbjct: 140 VFQMRRCE 147


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 180 CSHACRPSCAQHQPSPASGPAC 115
           C  AC PSC Q   +PA  P C
Sbjct: 178 CMPACLPSCVQSSCAPACQPMC 199



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 180 CSHACRPSCAQHQPSPASGPAC 115
           C  +C+PSC Q   +PA  P C
Sbjct: 225 CMPSCQPSCVQQACAPACQPMC 246


>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 481 MSLFVVIVFIKKSKMFYVFLTSFKQKC 561
           +S+F+V++FI    +F++F    + KC
Sbjct: 192 LSVFLVVIFIISEILFFIFYVKIQMKC 218


>AL021479-1|CAA16321.2|  346|Caenorhabditis elegans Hypothetical
           protein Y22F5A.2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 439 SFICQYYEYNLSKAMLLVPTINNV 368
           SF C + + N S+ + +VP +NN+
Sbjct: 311 SFFCNFCQQNQSRTITIVPPVNNL 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,805,323
Number of Sequences: 27780
Number of extensions: 274354
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)