Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L12
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    30   1.5  
At1g79560.1 68414.m09275 FtsH protease, putative contains simila...    28   4.7  
At2g10970.1 68415.m01172 invertase/pectin methylesterase inhibit...    28   6.2  
At5g37480.1 68418.m04514 expressed protein                             27   8.2  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
 Frame = -3

Query: 466 AIKKFQ*KASFICQYYEY---NLSKAMLLVPTINNVINYCXFSVQERRMPSDPGHWXWLI 296
           AIK F  K + IC        NL   +L VPTIN + N    + Q     S      +++
Sbjct: 234 AIKWFSTKGTRICDVCRQEVRNLPVILLRVPTINQLTNRRELTQQSSEPQSISVGQEFVV 293

Query: 295 LRNVSLCSQL*LFMTHSFPNDLGFSPVF-PAQIGSRLALVQSCMQAFL 155
           L  +S       F+ H    DL    +F  A     LAL+ S     L
Sbjct: 294 LVLISTVCYF-FFLEHLLIRDLNSQAIFVAAPFSFTLALLASTFAVIL 340


>At1g79560.1 68414.m09275 FtsH protease, putative contains
           similarity to chloroplast FtsH protease GI:5804782 from
           [Nicotiana tabacum]
          Length = 1008

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 66  FSCAFAVLFVAVSCRPDKLDLKQVKA 143
           FS   AV+F+  + RPD+LDL+ V++
Sbjct: 630 FSLRQAVIFICATNRPDELDLEFVRS 655


>At2g10970.1 68415.m01172 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 194

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -3

Query: 208 AQIGSRLALVQSCMQAFLRSASAFTCFRSSLSGRHDTATNNTAKAQENNGLHSWNETDE 32
           A+    LA+ ++    FL  +    CF+S +    D+      KAQ + G    +ETD+
Sbjct: 88  AKAALSLAMEKAEHTQFLIGSPKKPCFKSCMENYKDSVVEGLMKAQRSMGNGDVDETDD 146


>At5g37480.1 68418.m04514 expressed protein
          Length = 156

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 207 AGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQXQCPGSD 326
           A K GE+P SFG+   + NY    K  L+ +     PG++
Sbjct: 51  AAKEGEEPISFGDNASLLNYGLGWK--LKTVVDADLPGTE 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,565,615
Number of Sequences: 28952
Number of extensions: 236672
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)