Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L08
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    28   1.0  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    27   3.1  
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    26   5.5  

>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +2

Query: 494 SLYDASFKHYKRQXMSDKDAANTANKLLXIVQXKFDKMSXDEVDRLCYDCLLD 652
           +LY+ S+KH     M      N  +  L IV  +F  MS     RL Y  L D
Sbjct: 29  TLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSRVARHRLVYGLLKD 81


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/56 (21%), Positives = 28/56 (50%)
 Frame = +2

Query: 449 IKEXTKLNLVVKKPESLYDASFKHYKRQXMSDKDAANTANKLLXIVQXKFDKMSXD 616
           +   + + +   +PE   D S  H KR  +SD+ +  T+++ + ++    D++  D
Sbjct: 8   LSSTSNIPIAKAEPEQSADFSASHKKRGPVSDRSSRRTSSEEVDLMPNVDDEVDGD 63


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 263 KMKITVKQLQGGECLIXIYPSMLISELKRHVARKLHIPVE 382
           K+K+ V+ +QG  CL       + S+  R + RK    +E
Sbjct: 83  KVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIE 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,299
Number of Sequences: 5004
Number of extensions: 39085
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)