Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L08
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)              28   7.6  
SB_41563| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -1

Query: 221 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 105
           +L++LT +T+ D  Q+ +DLN    + N+++  +N++ C
Sbjct: 402 SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNINKC 440


>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -1

Query: 221 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 105
           +L++LT +T+ D  Q+ +DLN    + N+++  +N++ C
Sbjct: 470 SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNINKC 508


>SB_11412| Best HMM Match : APG6 (HMM E-Value=2.52234e-44)
          Length = 587

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/119 (14%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
 Frame = +2

Query: 269 KITVKQLQGGECLIXIYPSM-LISELKRHVARKLHIPVEQQKXXXXXXXXXDDHTIQMYP 445
           K+  +QL G E  +  +  + ++S     ++++L    ++++         +     +  
Sbjct: 147 KLNSQQLTGCEIKVISFGCICMLSSGSESLSKELEDLQKEEEELINRLDEVEQERHDVSE 206

Query: 446 NIKEXTKLNLVVKKPESLYDASFKHYKRQXMSDKDAANTANKLLXIVQXKFDKMSXDEV 622
            +K+  +++  +++ E  Y   +  Y+R+ +  +D   + +  +   Q + DK+    V
Sbjct: 207 ALKKEKEISKQLEEAEKAYYTEYCEYQRELLDFEDEKQSVDNQMMYAQAQLDKLKKTNV 265


>SB_41563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -1

Query: 221 NLVFLTPKTARDEAQVHHDLNNDL*FKNQFKG*MNLSSC 105
           +L++LT +T+ D  Q+ +DLN    + N+++  +N+  C
Sbjct: 16  SLLYLTIETSDDVIQLQNDLNKLYEWSNKWQMELNIDKC 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,293,842
Number of Sequences: 59808
Number of extensions: 292288
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)