Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L06
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   102   4e-23
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   101   6e-23
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   1.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.5  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   3.4  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.9  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   7.7  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  102 bits (244), Expect = 4e-23
 Identities = 45/82 (54%), Positives = 60/82 (73%)
 Frame = +2

Query: 245 RWPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRAHGRINPYM* 424
           RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RR TYRAHGR+  Y+ 
Sbjct: 82  RWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 425 SPCHIEVCLSEREDAVARVAPT 490
           SP HIE+ ++E E+AV +   T
Sbjct: 142 SPSHIEIIVAEEEEAVPKANDT 163



 Score = 71.7 bits (168), Expect = 7e-14
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +1

Query: 73  HFKNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 240
           HFKN+ E A  I  M  ++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25  HFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  101 bits (243), Expect = 6e-23
 Identities = 45/82 (54%), Positives = 59/82 (71%)
 Frame = +2

Query: 245 RWPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRAHGRINPYM* 424
           RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RR TYRAHGR+  Y+ 
Sbjct: 82  RWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLS 141

Query: 425 SPCHIEVCLSEREDAVARVAPT 490
           SP HIE+ ++E E+AV +   T
Sbjct: 142 SPSHIEIIVAEEEEAVPKANDT 163



 Score = 71.3 bits (167), Expect = 9e-14
 Identities = 32/56 (57%), Positives = 39/56 (69%)
 Frame = +1

Query: 73  HFKNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQ 240
           HFKN+ E A  I  M  ++A  +L NV E K+ +PFRRFNGGVGR AQ K+FG TQ
Sbjct: 25  HFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQ 80


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 233 QHRXRWPKKSXEFLLQLLRNAESNADNKTLDVDRLVI 343
           +H   WP    EF+ + +++AE N+  +  D  +L+I
Sbjct: 4   EHHSPWPDSLKEFIGRCIQDAEENSQPELEDEVKLLI 40


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 238 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 155
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 331 QASYRPHSGKSRALPTQXYIPCSRS---HQPLHVVSLPHRSMS 450
           Q+ +   S K RA   +  +  ++S   HQ +H +S PH S S
Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = -1

Query: 317 FCCQRLIQRSSITARGI------RRISWASXPCVVPNCFA*AQRPTPPLKRRNGIHSFFS 156
           FC   LI   S  A+ +      R ++  +   ++PN  A   R  PP K++N I + F 
Sbjct: 122 FCIWSLISGFSYYAKSVIMFDVCRALTGIAPAFLLPNALALLGRVYPPGKKKNLIFALFG 181

Query: 155 IT 150
            T
Sbjct: 182 AT 183


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 174 NTLFLFNHVFEVTNSTTXRHLSDCHCGL-IC 85
           N   L    F V +  T + ++DC CGL +C
Sbjct: 204 NLGILLKKEFRVRHMKTPQQINDCDCGLHVC 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,773
Number of Sequences: 5004
Number of extensions: 38516
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)