Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L06
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   120   8e-28
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   113   1e-25
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   2.6  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    29   3.4  

>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  120 bits (289), Expect = 8e-28
 Identities = 57/95 (60%), Positives = 69/95 (72%)
 Frame = +2

Query: 218 QSSLAQHRXRWPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRA 397
           +S  +  + RWP KS  F+L LL+NAESNAD K LDVD L + HIQVN+A   RR TYRA
Sbjct: 86  KSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRA 145

Query: 398 HGRINPYM*SPCHIEVCLSEREDAVARVAPTDDAP 502
           HGRINPYM SPCH+E+ LSE+E+AV +   T  AP
Sbjct: 146 HGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
 Frame = +1

Query: 34  RNHAKRVVQTSAVHF-KNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRFNGGVGRC 210
           R H K +V    V    NT ETA A+RK+P  +A RYL++VI  K+ IPFRR+ GGVGR 
Sbjct: 23  RVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGRT 82

Query: 211 AQAK 222
           AQ K
Sbjct: 83  AQVK 86


>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  113 bits (271), Expect = 1e-25
 Identities = 52/78 (66%), Positives = 61/78 (78%)
 Frame = +2

Query: 245 RWPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRAHGRINPYM* 424
           RWP KS  F+L LL+NAESNA+ K LDVD L + HIQVN+A   RR TYRAHGRINPYM 
Sbjct: 83  RWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMS 142

Query: 425 SPCHIEVCLSEREDAVAR 478
           SPCHIE+ LSE+E+ V +
Sbjct: 143 SPCHIELILSEKEEPVKK 160



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 35/51 (68%), Positives = 41/51 (80%)
 Frame = +1

Query: 70  VHFKNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 222
           VHFKNT ETA AIRK+P  +A RYL++VI  K+ IPFRR+ GGVGR AQAK
Sbjct: 24  VHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAK 74


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 254  KKSXEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 379
            K   EF  Q+ + +E  S  + + L +  + I H+  + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 317  FCCQRLIQRSSITARGIRRISWASXPCVVPNCFA*AQRPTPP 192
            F C RL  +S+   RG+  I WA+   V P   A   +P  P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,671,962
Number of Sequences: 37544
Number of extensions: 280530
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)