Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L06
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)               95   4e-20
SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)                    30   1.5  
SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)                     28   6.1  
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)                 28   6.1  
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)                    27   8.1  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 43/56 (76%), Positives = 48/56 (85%)
 Frame = +2

Query: 245 RWPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRAHGRIN 412
           RWPKKS E LLQLL+NAESNA+ K LDVD LV++HIQVN AP +RR TYRAHGRIN
Sbjct: 84  RWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139



 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 33/51 (64%), Positives = 42/51 (82%)
 Frame = +1

Query: 70  VHFKNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 222
           VH+KNT+E AMAI+ M  R+A RYLK+V  KK+ +PFR++NGGVGR AQAK
Sbjct: 24  VHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRKYNGGVGRKAQAK 74



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 33 TKSCKARGSNLR 68
          TKSCKARGSNLR
Sbjct: 12 TKSCKARGSNLR 23


>SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)
          Length = 798

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 282 NCKRNSXDFLGQRXLCCAKLLCLS 211
           +CK+N    LGQ+ +CC ++ CLS
Sbjct: 712 SCKQN-ISLLGQKCVCCTRVFCLS 734


>SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)
          Length = 553

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 216 LSTATNAAVEATEWNTLFLFNHVFEVTNSTTXRHLSDC-HCGLICVLKVNSGGLNHALC 43
           L+T+   +V+    N   L N+ F  TN ++   +  C H GL   L  NS GL+ A C
Sbjct: 53  LNTSFGESVKLISRNPA-LENNTFRYTNISSGLPVVRCLHYGLRMGLSTNSNGLSIAYC 110


>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
          Length = 459

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -3

Query: 333 LSTSKVLLSAFDSAFLNNCKRNSXDFLGQRXLCCAKLLCLSTATNAAVEATE 178
           +   K L  +  S  L NC+  + D L +   CC KL  L  +    ++A++
Sbjct: 98  IQVCKELADSVQSLSLQNCRCVNEDLLDRVFACCTKLTDLDVSRCRQLDASK 149


>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 1280

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 305 RLIQRSSITARGIRRISWAS--XPCVVPNCFA*AQRPTPPLK 186
           RL+++  I    IR   WA+   P + PNCF   Q P P L+
Sbjct: 287 RLVEQDVIEP--IRHSDWAAPVVPVLKPNCFQVEQYPIPTLE 326


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,544
Number of Sequences: 59808
Number of extensions: 330196
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)