Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L06
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   126   8e-30
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   110   8e-25
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  126 bits (305), Expect = 8e-30
 Identities = 61/85 (71%), Positives = 69/85 (81%)
 Frame = +2

Query: 245 RWPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRAHGRINPYM* 424
           RWP KS +FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRR TYRAHGRINPYM 
Sbjct: 84  RWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMS 143

Query: 425 SPCHIEVCLSEREDAVARVAPTDDA 499
           SPCHIEV L+E+ED V++  PTDDA
Sbjct: 144 SPCHIEVILAEKEDVVSK--PTDDA 166



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +1

Query: 70  VHFKNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQG 243
           VHFKNT+E AMA+R MP RRA  +L +V E KE +PFRRF+GG+GR AQ KQ+ TTQG
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTTQG 83



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 33 TKSCKARGSNLR 68
          TKSCKARGS+LR
Sbjct: 14 TKSCKARGSDLR 25


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  110 bits (264), Expect = 8e-25
 Identities = 54/75 (72%), Positives = 61/75 (81%)
 Frame = +2

Query: 275 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRAHGRINPYM*SPCHIEVCLS 454
           L LL+NAESNA+ K LDVD LVI+HI V RA  LRR TYRAHGRINPYM SPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 455 EREDAVARVAPTDDA 499
           E+ED V++  PTDDA
Sbjct: 126 EKEDVVSK--PTDDA 138



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 26/40 (65%), Positives = 31/40 (77%)
 Frame = +1

Query: 70  VHFKNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRF 189
           VHFKNT+E AMA+R MP RRA  +L +V E KE +PFRRF
Sbjct: 26  VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 33 TKSCKARGSNLR 68
          TKSCKARGS+LR
Sbjct: 14 TKSCKARGSDLR 25


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 195 AVEATEWNTLFLFN--HVFEVTNSTTXRHLSDCHCGLICVLKVN 70
           AV A  W  L +F+  + FE+ NS +    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +2

Query: 248 WPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRRXT-----YRAHGRI 409
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 410 NPYM*SPCHIEVCLSER 460
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>AF040649-6|AAB95006.1| 1360|Caenorhabditis elegans Hypothetical
           protein F33H12.6 protein.
          Length = 1360

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = +2

Query: 248 WPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRRXT-----YRAHGRI 409
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R  G  
Sbjct: 472 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPCGAQ 531

Query: 410 NPYM*SPCHIEVCLSER 460
           NP+  SPC ++   S+R
Sbjct: 532 NPH--SPCMVDGHCSKR 546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,062,702
Number of Sequences: 27780
Number of extensions: 230453
Number of successful extensions: 583
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)