Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L06
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.70 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.5  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 174 NTLFLFNHVFEVTNSTTXRHLSDCHCGLICVLKV 73
           N  FL + +F+         LSD   GL C + V
Sbjct: 312 NARFLMDSMFDFAERVNSLRLSDAELGLFCSVVV 345


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 303 FDSAFLNNCKRNSXDFLGQRXLCCAKLLCLSTATNAAVEATEWNTLFLFNHVFEVTNSTT 124
           F+  FLN+  ++  DF+ +   CC  +  LS   +  + A+  N+    N+   ++NS T
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCG-VHSLSDYNDKPIPASCCNS--PENNTCSISNSYT 179


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 493 ISR-GYPSDSIFAFAETYFDVAGRLHVGVDATVSTVCT 383
           ISR G    S  AF  T F+    LHV V+ATV+ V T
Sbjct: 256 ISRNGVRLSSARAFI-TPFENRSNLHVIVNATVTKVRT 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,609
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)