Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_L06
(566 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 113 1e-25
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 113 1e-25
At3g15530.2 68416.m01969 expressed protein 27 6.6
At3g15530.1 68416.m01968 expressed protein 27 6.6
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 27 8.7
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 27 8.7
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 27 8.7
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 8.7
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 113 bits (271), Expect = 1e-25
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +2
Query: 245 RWPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRAHGRINPYM* 424
RWP KS +F+L LL+NAESNA+ K LDVD L I HIQVN+A RR TYRAHGRINPYM
Sbjct: 83 RWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMS 142
Query: 425 SPCHIEVCLSEREDAVARVAPT 490
+PCHIE+ LSE+E+ V + T
Sbjct: 143 NPCHIELILSEKEEPVKKEPET 164
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +1
Query: 70 VHFKNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 222
VHFKNT ETA AIRK+P +A RYL++VI K+ IPF RF GVGR AQAK
Sbjct: 24 VHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAK 74
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 33 TKSCKARGSNLR 68
TKSCKARGS+LR
Sbjct: 12 TKSCKARGSDLR 23
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 113 bits (271), Expect = 1e-25
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +2
Query: 245 RWPKKSXEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRXTYRAHGRINPYM* 424
RWP KS +F+L LL+NAESNA+ K LDVD L I HIQVN+A RR TYRAHGRINPYM
Sbjct: 83 RWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMS 142
Query: 425 SPCHIEVCLSEREDAVARVAPT 490
+PCHIE+ LSE+E+ V + T
Sbjct: 143 NPCHIELILSEKEEPVKKEPET 164
Score = 70.5 bits (165), Expect = 7e-13
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +1
Query: 70 VHFKNTYETAMAIRKMPXRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 222
VHFKNT ETA AIRK+P +A RYL++VI K+ IPF RF GVGR AQAK
Sbjct: 24 VHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAK 74
>At3g15530.2 68416.m01969 expressed protein
Length = 288
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 558 LIIFSFXRASFFLESFFFAGASSVGA 481
L + F + FFL+SFF +GA+ + A
Sbjct: 41 LFLIYFDQICFFLDSFFLSGAARLAA 66
>At3g15530.1 68416.m01968 expressed protein
Length = 288
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 558 LIIFSFXRASFFLESFFFAGASSVGA 481
L + F + FFL+SFF +GA+ + A
Sbjct: 41 LFLIYFDQICFFLDSFFLSGAARLAA 66
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 168 VYSIPSLQRRRWSLCSS 218
V SIPSL RR W L SS
Sbjct: 43 VVSIPSLSRRSWRLASS 59
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 224 SLAQHRXRWPKKSXEFLLQLLRNAESN 304
S++ RWPK E L+++ +N E+N
Sbjct: 390 SVSPSSSRWPKTEVEALIRIRKNLEAN 416
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 224 SLAQHRXRWPKKSXEFLLQLLRNAESN 304
S++ RWPK E L+++ +N E+N
Sbjct: 313 SVSPSSSRWPKTEVEALIRIRKNLEAN 339
>At1g59453.1 68414.m06679 transcription factor-related weak
similarity to TFIIIC Box B-binding subunit [Homo
sapiens] GI:442362
Length = 1729
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = -2
Query: 142 GNEQHDGXASF*LPLRSHMCS*SEQRRFEPRALHDFVRVIR 20
GNE HD SF L RS S E + P L+D R IR
Sbjct: 591 GNEIHDRIRSFELGFRSQRSSKRESDKTVP-VLNDVQRAIR 630
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,598
Number of Sequences: 28952
Number of extensions: 215190
Number of successful extensions: 550
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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