Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L05
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    29   0.75 
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   2.3  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   7.0  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = +2

Query: 260 MDLVSLETSDENEWVK-ARIVQDXIK---YIWTSGRLCDFKGCNRPDLLPNEINGWFWTA 427
           MDLV   TSD++EW K +R  +   K   Y W   R  + KG   P   PN    +F T+
Sbjct: 105 MDLVLNHTSDQHEWFKESRSSKTNPKRDWYFWKPARYNE-KGERLP---PNNWRSYFDTS 160

Query: 428 ELQKLAPTTNRQQNDWSEG-GGIGXPQPDXRELI 526
             +    T     + WS G   +    P  RE +
Sbjct: 161 AWEWDEATQEYYLHLWSVGQPDLNWETPKVREAV 194


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 354 RPDVQMYFXLSWTIRALTHSFSSL 283
           + D+Q YF LSW I    H  S +
Sbjct: 183 KADIQCYFALSWLITWFAHDVSDI 206


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 621 GLRWWQATSCQWTXSL 574
           GL WW+A  C W   L
Sbjct: 85  GLNWWEAWICVWVGYL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,819
Number of Sequences: 5004
Number of extensions: 46519
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)