Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L05
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65760.1 68418.m08275 serine carboxypeptidase S28 family prot...    29   2.6  
At1g17270.1 68414.m02103 expressed protein                             29   3.4  
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ...    28   4.5  
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ...    28   4.5  
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ...    28   4.5  
At3g11880.1 68416.m01456 expressed protein                             27   7.9  

>At5g65760.1 68418.m08275 serine carboxypeptidase S28 family protein
           similar to SP|P42785 Lysosomal Pro-X carboxypeptidase
           precursor (EC 3.4.16.2) (Prolylcarboxypeptidase) (PRCP)
           (Proline carboxypeptidase) {Homo sapiens}; contains Pfam
           profile PF05577: Serine carboxypeptidase S28
          Length = 515

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 374 CNRPDLLPNEINGWFWTAELQKLAPTTNRQQNDWSEGGG 490
           C + D  P+ ++GW W A  + + P ++ Q+N    G G
Sbjct: 353 CFKLDDDPHGLDGWNWQACTEMVMPMSSNQENSMFPGYG 391


>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +2

Query: 158 YADNKGYFFSWR-DPALRGVEEDWLSARNYCRQRCMDLVSL---ETSDENEWVKARIVQD 325
           + D + +F S++ DP    V+E  L A N  RQ+ + LVSL      + +  + + +V D
Sbjct: 87  FTDTRTFFSSFKLDPMSSRVKESELQALNLLRQQQLALVSLLNRTNFNSSNAISSSVVID 146

Query: 326 XIK 334
            +K
Sbjct: 147 NVK 149


>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 453

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 364 VTKTARCPNVLYXVLDNTRFDPFIFIAGLERY*VHAALSAVVSCAQPVFFDAAERWVPP 188
           V K  R PN++   +D++  D    + GL RY       A  +   P F  + E+ +PP
Sbjct: 381 VWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKAREALNHPFFTRSREQSIPP 439


>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 364 VTKTARCPNVLYXVLDNTRFDPFIFIAGLERY*VHAALSAVVSCAQPVFFDAAERWVPP 188
           V K  R PN++   +D++  D    + GL RY       A  +   P F  + E+ +PP
Sbjct: 395 VWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKAREALNHPFFTRSREQSIPP 453


>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 364 VTKTARCPNVLYXVLDNTRFDPFIFIAGLERY*VHAALSAVVSCAQPVFFDAAERWVPP 188
           V K  R PN++   +D++  D    + GL RY       A  +   P F  + E+ +PP
Sbjct: 395 VWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKAREALNHPFFTRSREQSIPP 453


>At3g11880.1 68416.m01456 expressed protein
          Length = 443

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 84  TXPQWXHPGASGCLLCVYRETSMXDTLTIKDTSSRGGTQRSAASK 218
           T  +W    + G LLC +   S+   LTI +   +GG QR   SK
Sbjct: 87  TSVEWLDKFSIG-LLCAFVVWSLNRLLTILEPPQQGGHQRRTTSK 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,276,152
Number of Sequences: 28952
Number of extensions: 269000
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)