Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_L03
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    28   1.3  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   7.1  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   9.3  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 287 NIINEVFXKKEVEQKRFLP-SIKNYKVLGETRPSSFGPATYQDFKD 421
           NI+  V  K ++EQK  LP ++KN  + G+   SS   A ++++ D
Sbjct: 204 NIVGRVADKLQLEQKSVLPNAVKN--IDGQDDDSSEQTAAFEEYDD 247


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 225 ENSCLIKEARLY*IMVLKPSGTSLMRCSXRKRLNRKGFCPVSRII 359
           + +C     R+Y +M   P+G   +R +  + + R GF  V++I+
Sbjct: 305 DQNCSEDIIRMYRLMSRTPNGLQPLRQTFEEFVKRSGFAAVAKIV 349


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 522 SLGSDLGKSATTLNFSSKATVASTSNKE 605
           SL S+LGK+  T  + SKA V ++++ E
Sbjct: 473 SLSSNLGKTNPTSVYQSKANVTTSADVE 500


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 353 NYKVLGETRPSSFGPATYQDFK 418
           NY V  +TRPS  GP +   F+
Sbjct: 139 NYNVNPDTRPSKIGPPSTSHFQ 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,829
Number of Sequences: 5004
Number of extensions: 50309
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)