Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_L03
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 89 3e-18
SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 66 2e-11
SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09) 47 2e-05
SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 40 0.002
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 34 0.11
SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31) 31 1.1
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 28 7.5
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 28 7.5
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 27 9.9
>SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 842
Score = 89.0 bits (211), Expect = 3e-18
Identities = 37/74 (50%), Positives = 51/74 (68%)
Frame = +2
Query: 419 DIRSRCLXEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQ 598
D+R + G+ FED EF A+D S+++ + RP W RP +I ++P +FV G SR D+Q
Sbjct: 198 DVRRQVRSTGKPFEDDEFLAIDSSIFFSKRPPRPFEWKRPSDICEDPHMFVGGASRLDIQ 257
Query: 599 QGELGDCWLLAAVA 640
QG LGDCWLLAA+A
Sbjct: 258 QGMLGDCWLLAAIA 271
>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 1133
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +2
Query: 413 FKDIRSRCLXEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFD 592
F ++ + L RLFED +FPA +R L+ + + I W RP EIS +PQ G+S D
Sbjct: 12 FASLQRQLLNSKRLFEDRDFPASNRVLFTRRRSVQLI-WKRPHEISKSPQFIARGFSSSD 70
Query: 593 VQQGELGDCWLLAAVA 640
V QG + +CW +AA+A
Sbjct: 71 VAQGRIRNCWFVAALA 86
>SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +2
Query: 407 QDFKDIRSRCLXEGRLFEDPEFPAVDRSLYYKESLD-RPITWLRPGEISDN--PQLFVEG 577
Q + +++ C +LF D F SLYY S P+ W RP EI P LFV+G
Sbjct: 10 QRYSKLKAECEKNEQLFVDSVFKPETSSLYYSRSCPPEPVEWKRPSEICHPAVPHLFVDG 69
Query: 578 YSRFDVQQGELGDCWLLAA 634
DV QG+LG+CW +AA
Sbjct: 70 ADSHDVTQGKLGNCWFVAA 88
>SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09)
Length = 208
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +2
Query: 542 EISDNPQLFVEGYSRFDVQQGELGDCWLLAAVA 640
EI P+ +V+G SR D++QG LG+CWLLAA++
Sbjct: 97 EICSEPRFYVDGASRLDIKQGVLGNCWLLAAMS 129
>SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 1001
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Frame = +2
Query: 434 CLXEGRLFEDPEFPAVDRSLYYK---ESLDRPITWLRPGEISDN--------PQLFVEGY 580
C + F D FP V +SLY R WLRP EI DN P
Sbjct: 431 CKTQEIQFVDDSFPPVLKSLYINPRHSEHPRVADWLRPNEI-DNFSTCRTNIPWAVFRNP 489
Query: 581 SRFDVQQGELGDCWLLAAVA 640
D+ QG LGDCW L+++A
Sbjct: 490 RPSDIIQGVLGDCWFLSSLA 509
>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 669
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -2
Query: 221 RPCIRAPKFPPPFWPAIASSRTFTTTH*VPLLFXKTSWINSSIISTHNIL 72
R C RAPK PPP A+A R T P+ ++W SS+I +L
Sbjct: 480 RACARAPKMPPPERQALARLRAHT-----PVPESNSAWSASSVIGVAGLL 524
>SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)
Length = 541
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 201 WRPYTGXRENSCLIKEA--RLY*IMVLKPSG 287
WRP T N+C +K+A RLY + +LK SG
Sbjct: 262 WRPGTPDNPNACEVKKANKRLYALRLLKKSG 292
>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1399
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 269 HNSVEPGLLD*ATVFPRPCIRAPKFPPPFWPAIASSRTFTT 147
H+S+ P + + P+P IR P P P P + +S F T
Sbjct: 364 HDSLLPASRETSYRHPQPTIRPPFHPSPTRPNLPASANFFT 404
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 296 NEVFXKKEVEQKRFLPSIKNYKVLGETRPSSFGPATYQDFKD 421
NE + K ++ P +NYK+L +TR ++ G +Q K+
Sbjct: 41 NESWLKSDISSAEVFP--ENYKILRKTRDNNRGGGVFQAVKN 80
>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 953
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 221 RPCIRAPKFPPPFWPAIASSR 159
R C RAPK PPP A+A R
Sbjct: 680 RACARAPKMPPPERQALARLR 700
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 512 PGSPCSRGCGPRPETRGLRRVY 447
PG CS+ CG +TR LR +Y
Sbjct: 365 PGHGCSKSCGDGVKTRELRCLY 386
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,481,414
Number of Sequences: 59808
Number of extensions: 394214
Number of successful extensions: 809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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