Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_K22
(629 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36958 Cluster: DNA-directed RNA polymerase II subunit ... 216 3e-55
UniRef50_P36954 Cluster: DNA-directed RNA polymerase II subunit ... 189 4e-47
UniRef50_Q5DAX2 Cluster: SJCHGC05867 protein; n=1; Schistosoma j... 167 2e-40
UniRef50_Q8L5V0 Cluster: RNA Polymerase II subunit 14.5 kD, puta... 147 2e-34
UniRef50_Q6QAQ8 Cluster: DNA-directed RNA polymerase II; n=1; Su... 141 1e-32
UniRef50_Q55GG8 Cluster: DNA-directed RNA polymerase subunit; n=... 127 2e-28
UniRef50_P27999 Cluster: DNA-directed RNA polymerase II subunit ... 120 2e-26
UniRef50_A4RSQ4 Cluster: DNA-directed RNA polymerase II subunit ... 115 8e-25
UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=... 113 3e-24
UniRef50_Q8GSD5 Cluster: Putative RNA Polymerase II subunit 14.5... 109 4e-23
UniRef50_Q55M04 Cluster: DNA-directed RNA polymerase subunit; n=... 107 3e-22
UniRef50_Q6C1C2 Cluster: DNA-directed RNA polymerase subunit; n=... 100 2e-20
UniRef50_A4R9M8 Cluster: Putative uncharacterized protein; n=1; ... 95 1e-18
UniRef50_Q7RSD7 Cluster: DNA-directed RNA polymerase ii 15.1 kDa... 90 4e-17
UniRef50_Q8SQU1 Cluster: DNA-directed RNA polymerase II subunit ... 89 6e-17
UniRef50_A7AUU3 Cluster: DNA-directed RNA polymerase 2 subunit, ... 87 2e-16
UniRef50_Q8I241 Cluster: DNA-directed RNA polymerase 2 subunit, ... 85 1e-15
UniRef50_Q4UDQ7 Cluster: DNA-directed RNA polymerase 2 subunit, ... 85 2e-15
UniRef50_Q5CPB7 Cluster: DNA-directed RNA polymerase 2 subunit; ... 79 7e-14
UniRef50_A6RCK2 Cluster: Predicted protein; n=1; Ajellomyces cap... 77 5e-13
UniRef50_Q0C9E4 Cluster: Putative uncharacterized protein; n=2; ... 75 1e-12
UniRef50_A7EUD0 Cluster: Putative uncharacterized protein; n=1; ... 75 2e-12
UniRef50_Q7SBJ7 Cluster: Putative uncharacterized protein NCU085... 72 1e-11
UniRef50_Q4Q8Q8 Cluster: DNA-direcetd RNA polymerase II, subunit... 69 1e-10
UniRef50_Q0U3A2 Cluster: Predicted protein; n=1; Phaeosphaeria n... 67 3e-10
UniRef50_Q8MPH6 Cluster: DNA directed polymerase II subunit 9; n... 65 2e-09
UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2; T... 60 3e-08
UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M; ... 60 3e-08
UniRef50_UPI0000498537 Cluster: DNA-directed RNA polymerase II s... 60 4e-08
UniRef50_A6SDC8 Cluster: Putative uncharacterized protein; n=2; ... 59 8e-08
UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M; ... 59 8e-08
UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M; ... 58 2e-07
UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M; ... 57 4e-07
UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like pro... 54 2e-06
UniRef50_A7ASV0 Cluster: Transcription factor S-II protein, puta... 54 2e-06
UniRef50_O96159 Cluster: Transcription factor, putative; n=5; Pl... 53 7e-06
UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit, pu... 52 9e-06
UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2; M... 52 1e-05
UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4; E... 52 1e-05
UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1; Haloru... 51 2e-05
UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:... 51 3e-05
UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M; ... 50 3e-05
UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit... 50 5e-05
UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;... 50 6e-05
UniRef50_A2E2P5 Cluster: DNA-directed RNA polymerase II 15.1 kDa... 49 1e-04
UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M; ... 48 1e-04
UniRef50_A3DM83 Cluster: Transcription factor S; n=1; Staphyloth... 48 2e-04
UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa... 48 2e-04
UniRef50_Q245U9 Cluster: F-box domain containing protein; n=1; T... 47 3e-04
UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: Rp... 47 4e-04
UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit... 47 4e-04
UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit... 46 6e-04
UniRef50_Q9LU97 Cluster: Similarity to transcription-associated ... 46 7e-04
UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2; ... 46 7e-04
UniRef50_A0DZF5 Cluster: Chromosome undetermined scaffold_70, wh... 46 0.001
UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=... 46 0.001
UniRef50_A2ZGV6 Cluster: Putative uncharacterized protein; n=1; ... 45 0.001
UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit M/... 45 0.001
UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1; Cr... 45 0.002
UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, wh... 44 0.002
UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;... 44 0.003
UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=... 44 0.003
UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=... 44 0.003
UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M; ... 43 0.005
UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n... 42 0.009
UniRef50_UPI00006CB60F Cluster: hypothetical protein TTHERM_0044... 42 0.012
UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis thal... 42 0.012
UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=... 42 0.012
UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 42 0.012
UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit R... 42 0.012
UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2; Os... 42 0.016
UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1; ... 41 0.021
UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n... 41 0.021
UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.037
UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.049
UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like pr... 40 0.049
UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5; Euroti... 40 0.049
UniRef50_Q4DRW2 Cluster: Transcription elongation factor, putati... 40 0.065
UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1; Dictyost... 39 0.086
UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1; Methan... 39 0.086
UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3; Euryarchae... 39 0.11
UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS; ... 38 0.15
UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lambl... 38 0.20
UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII, pu... 37 0.35
UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit R... 37 0.35
UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=... 36 0.61
UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa... 36 0.61
UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lambl... 36 0.80
UniRef50_Q586X9 Cluster: Transcription elongation factor S-II, p... 36 0.80
UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II, p... 36 0.80
UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, wh... 36 0.80
UniRef50_Q2U4B9 Cluster: Transcription elongation factor TFIIS/C... 36 0.80
UniRef50_A3LRC5 Cluster: Predicted protein; n=5; Saccharomycetal... 36 0.80
UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=... 36 1.1
UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1; Tetrahy... 36 1.1
UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe gri... 36 1.1
UniRef50_P49373 Cluster: Transcription elongation factor S-II; n... 36 1.1
UniRef50_Q4T1I2 Cluster: Chromosome undetermined SCAF10575, whol... 35 1.4
UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza sativa... 35 1.4
UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=... 35 1.4
UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n... 35 1.4
UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to ENSANGP000... 35 1.9
UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS; ... 35 1.9
UniRef50_Q4UH96 Cluster: Transcription elongation factor, putati... 35 1.9
UniRef50_Q98TK0 Cluster: RNA polymerase III smallest subunit; n=... 34 2.4
UniRef50_P23193 Cluster: Transcription elongation factor A prote... 34 2.4
UniRef50_UPI00006CA3DD Cluster: Response regulator receiver doma... 34 3.2
UniRef50_Q197A5 Cluster: Putative uncharacterized protein; n=1; ... 34 3.2
UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II, p... 34 3.2
UniRef50_Q8I2A5 Cluster: Putative uncharacterized protein PFA017... 33 4.3
UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=... 33 4.3
UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=... 33 5.7
UniRef50_A0DNJ2 Cluster: Chromosome undetermined scaffold_58, wh... 33 5.7
UniRef50_Q15560 Cluster: Transcription elongation factor A prote... 33 5.7
UniRef50_A5CXS0 Cluster: Primosomal protein N'; n=2; sulfur-oxid... 31 6.2
UniRef50_Q8IK94 Cluster: Putative uncharacterized protein; n=1; ... 32 9.9
UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;... 32 9.9
UniRef50_Q06AK7 Cluster: DNA topoisomerase 1; n=69; Firmicutes|R... 32 9.9
>UniRef50_P36958 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=9; Coelomata|Rep: DNA-directed RNA polymerase II
subunit RPB9 - Drosophila melanogaster (Fruit fly)
Length = 129
Score = 216 bits (528), Expect = 3e-55
Identities = 92/118 (77%), Positives = 101/118 (85%), Gaps = 2/118 (1%)
Frame = +1
Query: 217 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTH 396
GPG+VGI+FCQECNNMLYP+EDK NK+LLYACRNCDYKQ ADSNC+YVNKIMH + ELTH
Sbjct: 12 GPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTH 71
Query: 397 INPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTE 564
I PDV SDPTLP T+DH CPKC+HREAVFFQ QT RAE+ M LYYVCT C H WTE
Sbjct: 72 IVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>UniRef50_P36954 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=18; Eumetazoa|Rep: DNA-directed RNA polymerase
II subunit RPB9 - Homo sapiens (Human)
Length = 125
Score = 189 bits (461), Expect = 4e-47
Identities = 80/117 (68%), Positives = 92/117 (78%), Gaps = 2/117 (1%)
Frame = +1
Query: 220 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI 399
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI H V ELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTX--CKHXWTE 564
DV DPTLP T+DH C KC H+EAVFFQ + RAE M LYYVCT C H WTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>UniRef50_Q5DAX2 Cluster: SJCHGC05867 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05867 protein - Schistosoma
japonicum (Blood fluke)
Length = 126
Score = 167 bits (406), Expect = 2e-40
Identities = 73/115 (63%), Positives = 84/115 (73%), Gaps = 2/115 (1%)
Frame = +1
Query: 226 YVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINP 405
+VGI FC ECNNMLYP+EDK K L YACRNCDY Q AD+ CVY+NK+ V EL I P
Sbjct: 12 HVGILFCSECNNMLYPKEDKRTKTLFYACRNCDYSQEADNPCVYINKLEQEVDELALIVP 71
Query: 406 DVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTE 564
DV DPTLP T+DH+C +C +EAVFFQ QT +AE+ M LYYVCT C H WTE
Sbjct: 72 DVVHDPTLPRTEDHICRRCGKQEAVFFQSQTLKAEENMRLYYVCTNVECLHKWTE 126
>UniRef50_Q8L5V0 Cluster: RNA Polymerase II subunit 14.5 kD,
putative; n=9; Magnoliophyta|Rep: RNA Polymerase II
subunit 14.5 kD, putative - Arabidopsis thaliana
(Mouse-ear cress)
Length = 114
Score = 147 bits (357), Expect = 2e-34
Identities = 64/112 (57%), Positives = 79/112 (70%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC+ECNN+LYP+EDK +LLYACRNCD+++ AD+NCVY N++ H V E T I DV
Sbjct: 4 MKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILSDVA 63
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
SDPTLP TK C KC H EAVFFQ T R E+ M L++VC C H W E
Sbjct: 64 SDPTLPRTKAVRCAKCQHGEAVFFQA-TARGEEGMTLFFVCCNPNCSHRWRE 114
>UniRef50_Q6QAQ8 Cluster: DNA-directed RNA polymerase II; n=1; Sus
scrofa|Rep: DNA-directed RNA polymerase II - Sus scrofa
(Pig)
Length = 105
Score = 141 bits (342), Expect = 1e-32
Identities = 63/105 (60%), Positives = 73/105 (69%), Gaps = 2/105 (1%)
Frame = +1
Query: 256 NNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLPX 435
NNMLYP+EDK N++LL RNCDY+Q D++C+YVNKI V ELT I DV DPTLP
Sbjct: 1 NNMLYPKEDKENRILLSVSRNCDYQQEGDNSCIYVNKITPEVGELTQIIADVSQDPTLPR 60
Query: 436 TKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTX--CKHXWTE 564
+DH C K H+EAVFFQ + RAE M LYYVCT C H WTE
Sbjct: 61 NEDHPCQKRGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 105
>UniRef50_Q55GG8 Cluster: DNA-directed RNA polymerase subunit; n=1;
Dictyostelium discoideum AX4|Rep: DNA-directed RNA
polymerase subunit - Dictyostelium discoideum AX4
Length = 112
Score = 127 bits (307), Expect = 2e-28
Identities = 58/102 (56%), Positives = 66/102 (64%)
Frame = +1
Query: 256 NNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLPX 435
NNMLYP+ DK NK LL ACR CD+K+ A +NCVY N+I H V E T I+ D+ SDPTLP
Sbjct: 8 NNMLYPKADKANKTLLLACRICDHKEEATNNCVYRNEIRHSVMEKTQISQDIASDPTLPR 67
Query: 436 TKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
TK CP C REA FFQ T A M L+YVC C WT
Sbjct: 68 TKAAKCPSCGGREAAFFQSMT--AANGMTLFYVCASCGERWT 107
>UniRef50_P27999 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=8; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB9 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 122
Score = 120 bits (290), Expect = 2e-26
Identities = 52/108 (48%), Positives = 70/108 (64%)
Frame = +1
Query: 238 QFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXS 417
+FC++CNNMLYPREDK N LL+ CR C Y + A S VY ++++ + E + D+ S
Sbjct: 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGS 64
Query: 418 DPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
DPTLP + D CPKC+ RE VFFQ Q R + M L++VC C H +T
Sbjct: 65 DPTLPRS-DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111
>UniRef50_A4RSQ4 Cluster: DNA-directed RNA polymerase II subunit 9,
probable; n=1; Ostreococcus lucimarinus CCE9901|Rep:
DNA-directed RNA polymerase II subunit 9, probable -
Ostreococcus lucimarinus CCE9901
Length = 124
Score = 115 bits (277), Expect = 8e-25
Identities = 52/122 (42%), Positives = 72/122 (59%)
Frame = +1
Query: 199 LSRKDGGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHX 378
++ D G V ++FC N++LYP+ED+ NK L+Y CRNCDY A NCV+ I H
Sbjct: 1 MAGSDTHSGAVPLRFCPNSNDLLYPKEDRVNKKLVYFCRNCDYTIAATENCVHRRTIFHS 60
Query: 379 VXELTHINPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
E+T + DV +DPTLP +KD C C+ REAVFF T + M L++ C C + W
Sbjct: 61 ASEITAVIHDVRTDPTLPRSKDVQCSLCDAREAVFFSQTTT---EGMSLFFQCINCGNKW 117
Query: 559 TE 564
+
Sbjct: 118 KD 119
>UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=9;
Ascomycota|Rep: DNA-directed RNA polymerase subunit -
Aspergillus fumigatus (Sartorya fumigata)
Length = 128
Score = 113 bits (272), Expect = 3e-24
Identities = 50/106 (47%), Positives = 65/106 (61%)
Frame = +1
Query: 229 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPD 408
+ +FC+EC+N+LYP+ED+ N L++ CR C + A S CVY NK+ V + + D
Sbjct: 19 IHFRFCRECSNLLYPKEDRVNNRLMFTCRTCHVGEPATSYCVYQNKLNSQVGDTAGVTQD 78
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXC 546
V SDPTLP + + CP C EAVFFQ Q AE M LYYVC C
Sbjct: 79 VGSDPTLPRS-NKPCPSCGEAEAVFFQSQQRSAETGMKLYYVCCAC 123
>UniRef50_Q8GSD5 Cluster: Putative RNA Polymerase II subunit 14.5
kD; n=1; Oryza sativa (japonica cultivar-group)|Rep:
Putative RNA Polymerase II subunit 14.5 kD - Oryza
sativa subsp. japonica (Rice)
Length = 116
Score = 109 bits (263), Expect = 4e-23
Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC EC+NMLYPREDK LLYAC +C++++ A CVY + E I D
Sbjct: 6 LKFCGECSNMLYPREDKETHTLLYACNSCEHQEPATDTCVYKRVLRKPAGEPKDILKDAA 65
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+DPTLP T+ C C H EA FFQ T + E+ + LY++C C H W +
Sbjct: 66 TDPTLPRTRSIKCYNCGHPEAAFFQAPT-KGEKGLTLYFICCNPSCGHRWRD 116
>UniRef50_Q55M04 Cluster: DNA-directed RNA polymerase subunit; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase subunit - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 123
Score = 107 bits (256), Expect = 3e-22
Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLAD-----SNCVYVNKIMHXVXELTHI 399
++FC ECNN+LYP+ D N KVLLY CRNC+Y + A + CVY + ++ E
Sbjct: 4 LKFCGECNNLLYPKSDNNAKVLLYQCRNCNYTENATVEPGMAGCVYKHDLLTVAREQPGE 63
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
D+ +DPTL + CP C+H AVFFQ Q R M L+Y CT CKH + +
Sbjct: 64 TKDLDTDPTLQRSAIE-CPACHHHGAVFFQDQGRRITTNMTLFYYCTNCKHLFRD 117
>UniRef50_Q6C1C2 Cluster: DNA-directed RNA polymerase subunit; n=1;
Yarrowia lipolytica|Rep: DNA-directed RNA polymerase
subunit - Yarrowia lipolytica (Candida lipolytica)
Length = 100
Score = 100 bits (240), Expect = 2e-20
Identities = 42/97 (43%), Positives = 62/97 (63%)
Frame = +1
Query: 262 MLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLPXTK 441
MLYPREDK ++ LL+ACRNC Y + A + V+ ++++ + E + + +DPTLP +
Sbjct: 1 MLYPREDKEDRKLLFACRNCPYTEFASTPLVFKHQLITNIEETAGVTTGIGADPTLPRS- 59
Query: 442 DHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKH 552
D CPKC+ + VFFQ Q RAE M L++VC C +
Sbjct: 60 DKECPKCHEHDVVFFQSQQKRAETTMILFFVCNNCNN 96
>UniRef50_A4R9M8 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 131
Score = 95.1 bits (226), Expect = 1e-18
Identities = 50/130 (38%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Frame = +1
Query: 187 SAISLSRKDGGPGY----VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCV 354
S +S S +DG + V QFC EC+NMLYP+ED+ + L + CR C Y A + CV
Sbjct: 3 SPMSTSGQDGQQSHTKKPVEFQFCAECSNMLYPKEDEETRTLQFTCRTCHYTTNASNTCV 62
Query: 355 YVNKIMHXVXELTHINPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYV 534
+ N++ I + DPTLP K C C E VFFQ Q AE M YV
Sbjct: 63 FRNELNSSASLHAGIIEGMGKDPTLPRAK-KTCQYCGFDEMVFFQAQQRTAETGMKQIYV 121
Query: 535 CTXCKHXWTE 564
C C T+
Sbjct: 122 CVECSKPQTD 131
>UniRef50_Q7RSD7 Cluster: DNA-directed RNA polymerase ii 15.1 kDa
polypeptide; n=3; Plasmodium (Vinckeia)|Rep:
DNA-directed RNA polymerase ii 15.1 kDa polypeptide -
Plasmodium yoelii yoelii
Length = 226
Score = 90.2 bits (214), Expect = 4e-17
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDY---KQLADSNCVYVNKIMHXVXELTHINP 405
+ FC++CNN+LY R DK NK L+Y CR+CDY KQ + N V + E +I+P
Sbjct: 4 VNFCEKCNNILYARSDKKNKKLIYVCRSCDYISNKQNENHNIVARINYNYNRKEDIYIHP 63
Query: 406 DVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTEXIE 573
+ +D L +D +C +CN+ EAVF Q + M L YVCT C++ W + I+
Sbjct: 64 ETKNDSALGRVRDWVCKQCNNSEAVFLQLXEKISYNPMALIYVCTNKDCQY-WEKEIQ 120
>UniRef50_Q8SQU1 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=1; Encephalitozoon cuniculi|Rep: DNA-directed
RNA polymerase II subunit RPB9 - Encephalitozoon
cuniculi
Length = 108
Score = 89.4 bits (212), Expect = 6e-17
Identities = 39/108 (36%), Positives = 60/108 (55%)
Frame = +1
Query: 238 QFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXS 417
+FC+ECNN+LYP+ED N L AC+NC++ Q A S+ +YV + D+
Sbjct: 4 RFCKECNNLLYPKEDDN--TLFLACKNCEHIQEAKSHRLYVKNFRPKHASIELYARDLVQ 61
Query: 418 DPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
DPTLP K + C C + ++FQ + + + ++Y+C C H WT
Sbjct: 62 DPTLPSVKIN-CGNCGFNKGLYFQPRGGEEDVALSIFYLCCRCYHLWT 108
>UniRef50_A7AUU3 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Babesia bovis
Length = 163
Score = 87.4 bits (207), Expect = 2e-16
Identities = 45/120 (37%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLAD-----SNCVYVNKIMHXVXELTHI 399
++FC ECNN+LY R D + L++ CR CDY + AD NC+ + E I
Sbjct: 4 LKFCPECNNILYARPDLTRRQLVFICRQCDYSRWADPGSLLDNCINRTTYNYQTREDIII 63
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTEXIE 573
P + DPTL T+ CP+C H EA FFQ + M L +VC C WT+ I+
Sbjct: 64 PPLITKDPTLGRTRQWDCPRCGHTEATFFQLPERAYDDAMVLVFVCCNPGC-GFWTKQID 122
>UniRef50_Q8I241 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=3; Plasmodium|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Plasmodium falciparum
(isolate 3D7)
Length = 249
Score = 85.4 bits (202), Expect = 1e-15
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDY---KQLADSNCVYVNKIMHXVXELTHINP 405
++FC+ECNN+LY + D+ +K L+Y CR+C+Y K ++N V + E +I+P
Sbjct: 4 VRFCEECNNILYAKSDRKSKKLIYVCRSCEYISLKPNENNNIVARINYNYDRKEDIYIHP 63
Query: 406 DVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXW 558
+ +DP L +D +C +C + EAVF Q + M L YVCT C H W
Sbjct: 64 ETKNDPALGRVRDWVCKQCGNNEAVFLQLAEKISYNPMALIYVCTNKHC-HYW 115
>UniRef50_Q4UDQ7 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=2; Theileria|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Theileria annulata
Length = 167
Score = 84.6 bits (200), Expect = 2e-15
Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADS-----NCVYVNKIMHXVXELTHI 399
I FC ECNN+LY + D + L Y CR CD+ +++DS NC+Y E +
Sbjct: 4 INFCPECNNILYAKADILKRQLRYFCRQCDFSRISDSKSSEDNCIYRTDYNIAGKENIFV 63
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC 537
+P V DPTL T C KC H++AVFFQ + M L +VC
Sbjct: 64 SPMVVKDPTLGRTTRWRCLKCGHQKAVFFQLPERVTDDAMMLVFVC 109
>UniRef50_Q5CPB7 Cluster: DNA-directed RNA polymerase 2 subunit;
n=2; Cryptosporidium|Rep: DNA-directed RNA polymerase 2
subunit - Cryptosporidium hominis
Length = 167
Score = 79.4 bits (187), Expect = 7e-14
Identities = 42/109 (38%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLAD-----SNCVYVNKIMHXVXELTHI 399
I+FC ECNN+L P+E+ + LLYACRNC+Y AD N V + E +
Sbjct: 5 IRFCPECNNILCPKENIERRKLLYACRNCEYFSYADPTNAEENVVNCITYQYEGKEDILV 64
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXC 546
+ DPTL T + C C H AVFFQ + M L +VC C
Sbjct: 65 ARGLHQDPTLGRTLEWNCRGCGHNVAVFFQLPERVCSEAMTLVFVCVSC 113
>UniRef50_A6RCK2 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 76.6 bits (180), Expect = 5e-13
Identities = 41/115 (35%), Positives = 56/115 (48%)
Frame = +1
Query: 217 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTH 396
G + +FC+EC+N+LYP+ED+N L++ CR C + A S C
Sbjct: 16 GSSQIHFRFCRECSNLLYPKEDRNTNTLMFTCRTCHVGEPASSPC--------------- 60
Query: 397 INPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
LP + + +CP C EAVFFQ Q AE M LYYVC C + +T
Sbjct: 61 ----------LPRS-NKLCPSCGENEAVFFQSQQRSAETGMKLYYVCCTCGNVFT 104
>UniRef50_Q0C9E4 Cluster: Putative uncharacterized protein; n=2;
Eurotiomycetidae|Rep: Putative uncharacterized protein -
Aspergillus terreus (strain NIH 2624)
Length = 111
Score = 75.4 bits (177), Expect = 1e-12
Identities = 35/89 (39%), Positives = 50/89 (56%)
Frame = +1
Query: 229 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPD 408
V +FC+EC+N+LYP+ED+ N L++ CR C + A S CVY NK+ V + + D
Sbjct: 19 VHFRFCRECSNLLYPKEDRANNRLMFTCRTCHVGEPASSYCVYQNKLNTQVGDTAGVTQD 78
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQ 495
V SDPT+ + C C A F G+
Sbjct: 79 VGSDPTV--SLPGFCTLCGDEIACFSCGE 105
>UniRef50_A7EUD0 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 119
Score = 74.5 bits (175), Expect = 2e-12
Identities = 36/93 (38%), Positives = 52/93 (55%)
Frame = +1
Query: 229 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPD 408
+ +FC EC+NMLYP+ED + L +ACR C Y + A S+CV+ N + + V E + D
Sbjct: 19 ITFRFCSECSNMLYPKEDPDTHRLQFACRTCQYSEEAVSSCVFRNILNNAVGETAGVTQD 78
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRA 507
V SDPT+ +C C H V +G+ A
Sbjct: 79 VGSDPTVGLP---LCLLCGH--VVICEGRASSA 106
>UniRef50_Q7SBJ7 Cluster: Putative uncharacterized protein
NCU08553.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU08553.1 - Neurospora crassa
Length = 230
Score = 72.1 bits (169), Expect = 1e-11
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +1
Query: 229 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPD 408
+ +FC EC+NMLYPRE ++ LL+ CR C++ + A S C+Y N + + E + D
Sbjct: 21 ITFRFCSECSNMLYPREAEDENKLLFTCRTCNFSEPATSTCIYRNILNNAAGETAGVTQD 80
Query: 409 VXSDPTL 429
V SDPT+
Sbjct: 81 VASDPTV 87
>UniRef50_Q4Q8Q8 Cluster: DNA-direcetd RNA polymerase II, subunit 9,
putative; n=6; Trypanosomatidae|Rep: DNA-direcetd RNA
polymerase II, subunit 9, putative - Leishmania major
Length = 140
Score = 68.5 bits (160), Expect = 1e-10
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Frame = +1
Query: 169 INSKEMSAISLSRKDGGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDY-KQLADS 345
+ ++E++ +S+ P + FC CNN+LYP D +N + + C C +Q D
Sbjct: 1 MEAEEITQVSIGNATTAP----MLFCSRCNNLLYPECDDDNYSMTWRCNYCKTTEQHDDC 56
Query: 346 NCVYVNKIMHXVXELTHIN--PDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXM 519
V+V + + ++ + +DPT D CPKC+ + F + ++ M
Sbjct: 57 KLVHVMNLKMKADAIGGMDLVAEFANDPTAQRDPDKPCPKCSKKGVACFVNPLGQPQEDM 116
Query: 520 XLYYVC--TXCKHXW 558
LY+ C T C+H W
Sbjct: 117 TLYFACSDTVCRHVW 131
>UniRef50_Q0U3A2 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 157
Score = 67.3 bits (157), Expect = 3e-10
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +1
Query: 238 QFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXS 417
+FC EC+N+L+PREDK+ LL+ACR C + + A S+CV + I V + +V
Sbjct: 20 RFCSECSNLLFPREDKSENKLLFACRTCSFTEEAPSSCVMRHDISSTVGATAGVTAEVAQ 79
Query: 418 DPTL 429
DPT+
Sbjct: 80 DPTV 83
>UniRef50_Q8MPH6 Cluster: DNA directed polymerase II subunit 9; n=1;
Sterkiella histriomuscorum|Rep: DNA directed polymerase
II subunit 9 - Oxytricha trifallax (Sterkiella
histriomuscorum)
Length = 129
Score = 64.9 bits (151), Expect = 2e-09
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNN---KVLLYACRNCDYKQLAD-----SNCVYVNKIMHXVXEL 390
++FC+EC+NML P+E + L+Y CR C Y + A NCVY ++ + +
Sbjct: 1 MRFCKECDNMLQPKEKMESDGPSYLIYDCRTCGYSERARPNDEVDNCVYRSE-QTKMSDK 59
Query: 391 THINPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
++ + DP L C KC + AV F T +++ M L VCT C H W
Sbjct: 60 FLVDVECIKDPCLARRIGKPCQKCGNTLAVTF---TNPSKERMNLISVCTQCTHYW 112
>UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2;
Thermoprotei|Rep: Archaeal transcription factor S -
Aeropyrum pernix
Length = 118
Score = 60.5 bits (140), Expect = 3e-08
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
I+FC C +++YP+ D +L+ C++C Y + A ++ V + V
Sbjct: 5 IKFCPRCGSIMYPKRDGARYLLV--CKSCGYSEEASREDHQAYRMRVTVEKGPRDKIVVI 62
Query: 415 SDPTLPXTK----DHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
D T + CPKC H E F+ QT A++ M +Y C C++ W E
Sbjct: 63 DDETPVGAQVLKGSVTCPKCGHDEVYFWMMQTRSADEPMTRFYRCKRCRYTWRE 116
>UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit M - Sulfolobus acidocaldarius
Length = 111
Score = 60.5 bits (140), Expect = 3e-08
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIM-HXVXELTHINPDV 411
++FC +C +M+ PR K N +Y C C Y + + ++ H E T +
Sbjct: 1 MKFCPKCGSMMMPR--KENGKTVYKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLESD 58
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ T+ CP C + EA F+ QT A++ +Y CT C W E
Sbjct: 59 MPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109
>UniRef50_UPI0000498537 Cluster: DNA-directed RNA polymerase II
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase II subunit - Entamoeba
histolytica HM-1:IMSS
Length = 137
Score = 60.1 bits (139), Expect = 4e-08
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACR--NCDYKQLAD---SNCVYVNKIMHXVXELTHINP 405
FC +C+ ++ PR ++ L + CR NC + + A+ S CVY+ + T +
Sbjct: 11 FCPDCHQIMLPRSCGDD--LYFVCRRPNCGHFEKAEDPTSFCVYIKNFSET--KATTVAA 66
Query: 406 DVXSDPTLPXTKDHMCPKCNHR-EAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
DV DPT P T +CP C + +AV++ + + Y CT C + W E
Sbjct: 67 DVSKDPTYPKTTK-LCPHCGQQHDAVYYYSAHWNYNCSLQINYQCTNCMYSWAE 119
>UniRef50_A6SDC8 Cluster: Putative uncharacterized protein; n=2;
Pezizomycotina|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 83
Score = 59.3 bits (137), Expect = 8e-08
Identities = 28/69 (40%), Positives = 39/69 (56%)
Frame = +1
Query: 262 MLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLPXTK 441
MLYP+ED + L +ACR C Y + A S+CV+ N + + V E + DV SDPT+
Sbjct: 1 MLYPKEDPDTHRLQFACRTCQYSEEAVSSCVFRNVLNNAVGETAGVTQDVGSDPTVGLP- 59
Query: 442 DHMCPKCNH 468
+C C H
Sbjct: 60 --LCLLCGH 66
>UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M;
n=9; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanococcus jannaschii
Length = 108
Score = 59.3 bits (137), Expect = 8e-08
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQ--LADSNCVYVNK--IMHXVXELTHIN 402
++FC +CNN++ P++ K C C Y++ A+ + Y K + + ++T I
Sbjct: 2 VKFCPKCNNLMLPKDGK------LKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIE 55
Query: 403 PDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ TLP T+ CPKC H EA ++ QT A++ +Y C C H W E
Sbjct: 56 SEGLE--TLPTTRIE-CPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106
>UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M;
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanobacterium thermoautotrophicum
Length = 104
Score = 57.6 bits (133), Expect = 2e-07
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDY-KQLADS--NCVYVNKIMHXVXELTHINP 405
++FC +C +++P E K + C+ C Y K + D + V++ + +
Sbjct: 1 MEFCPKCGAVMFPSEGK------FKCQ-CGYEKDITDKLKDKYRVSEEVEAKETIIFTGD 53
Query: 406 DVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
DV TLP T+ CPKC + EA ++ QT RA++ ++ CT CKH W E
Sbjct: 54 DVN---TLPTTRVE-CPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 102
>UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M;
n=7; Thermoprotei|Rep: DNA-directed RNA polymerase
subunit M - Pyrobaculum aerophilum
Length = 110
Score = 56.8 bits (131), Expect = 4e-07
Identities = 31/110 (28%), Positives = 46/110 (41%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC ++L P N VL C C Y++ + + V +
Sbjct: 1 MRFCPNDKSLLIPVRKGNVTVL--RCPKCGYEEEVSQDVKNRYQSKTAVESRNSVIVVAD 58
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ P LP K CPKC H EA + QT A++ +Y CT C + W E
Sbjct: 59 TTPNLPKVKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGYTWRE 108
>UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like
protein; n=2; Schistosoma|Rep: RNA polymerase III
subunit C11-like protein - Schistosoma mansoni (Blood
fluke)
Length = 115
Score = 54.4 bits (125), Expect = 2e-06
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINP--D 408
+ FC C+++L E + L + C Y+ V +K V +
Sbjct: 3 VLFCPLCHSLLMIEESAHCYSLNCSAPICSYRWFVTQPLVLEHKPRQDVRLRLEEDAVFS 62
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
V + + D CPKC+H A F Q QT A++ + Y C C H WTE
Sbjct: 63 VEDEYSSSAQTDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCIKCHHIWTE 114
>UniRef50_A7ASV0 Cluster: Transcription factor S-II protein,
putative; n=3; Piroplasmida|Rep: Transcription factor
S-II protein, putative - Babesia bovis
Length = 109
Score = 54.4 bits (125), Expect = 2e-06
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Frame = +1
Query: 289 NKVLLYACRNCDYKQLADSNCVY---VNKIMHXVXELTHINPDVXSDPTLPXTKDH---- 447
+ VL ++C + CVY +++ H T ++ P +H
Sbjct: 9 HSVLFFSCNPPQTSTFSCMRCVYELPISRRYHKSTVYTQFEKEIPRSPHSVNEFEHAPKI 68
Query: 448 --MCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+CP C+++EA F QT A++ M ++VCT C+H W E
Sbjct: 69 IAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCTACRHRWKE 109
>UniRef50_O96159 Cluster: Transcription factor, putative; n=5;
Plasmodium|Rep: Transcription factor, putative -
Plasmodium falciparum (isolate 3D7)
Length = 106
Score = 52.8 bits (121), Expect = 7e-06
Identities = 26/108 (24%), Positives = 52/108 (48%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C+N++ +K + + C++C+YK N +Y + ++ ++
Sbjct: 4 FCPNCHNIVLVHIEKG---VYFYCKSCNYKYKI-KNKIYNKFDCQQFNKTIPLDAVDINN 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ T+ +CPKC + EA F+ Q A++ ++Y+C C + W E
Sbjct: 60 KNMSKTQA-VCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWKE 106
>UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit,
putative; n=2; Filobasidiella neoformans|Rep: RNA
polymerase III smallest subunit, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 132
Score = 52.4 bits (120), Expect = 9e-06
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLY--PREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
FC C N L RED +KV C C Y+ + + + E+ +
Sbjct: 3 FCPYCANSLTIGDREDSTDKV----CPTCPYQFIIERQISMRTHLKRK--EVDDVLGGKE 56
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ + T D CPKC+HR A F Q Q A++ M +Y C C H W E
Sbjct: 57 AWANVDKT-DTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105
>UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2;
Methanococcaceae|Rep: Archaeal transcription factor S -
Methanococcus thermolithotrophicus
Length = 105
Score = 52.0 bits (119), Expect = 1e-05
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQ-LADSNCVYV--NKIMHXVXELTHINP 405
++FC +CNN++ P KN ++ C C +++ L + Y KI E+T I
Sbjct: 2 VEFCPKCNNIMLP---KNGRL---KCTVCGFEEELGNRTEEYELKEKIEAKKQEVTVIE- 54
Query: 406 DVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
DV TLP T+ CP C + EA ++ QT A++ +Y C C H W E
Sbjct: 55 DVD---TLPTTRIE-CPSCGNMEASWWLQQTRCADEPETRFYKCKKCGHTWRE 103
>UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4;
Euryarchaeota|Rep: Archaeal transcription factor S -
Uncultured methanogenic archaeon RC-I
Length = 106
Score = 52.0 bits (119), Expect = 1e-05
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADS-NCVYVNKIMHXVXELTHINPDV 411
++FC +C +++ P K CR C +++ A + N + + E+T + D
Sbjct: 1 MEFCPKCKSIMRPGGGGMVK-----CRKCGHEKKAQAGNMIVGGPVKDQEREITVL--DE 53
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
D LP T++ CP C +++A ++ Q A++ ++ CT C W E
Sbjct: 54 KQDAGLPTTEEVKCPDCGNQKAYWWMRQLRSADESEVRFFRCTECGKTWRE 104
>UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Transcription
factor TFIIS - Halorubrum lacusprofundi ATCC 49239
Length = 108
Score = 51.2 bits (117), Expect = 2e-05
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYA-CRNCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
++FC EC +M+ E +++ V C N + D +++ V +++
Sbjct: 1 MKFCDECGSMMKSGEGEDHWVCSSEDCGNELGRDNGDDEWTTESQVESEVIDVSD----- 55
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
D LP T H CP+C + A ++ Q A++ ++VCT C+H W E
Sbjct: 56 AEDKGLPKTTAH-CPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 105
>UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:
NEQ377 - Nanoarchaeum equitans
Length = 106
Score = 50.8 bits (116), Expect = 3e-05
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC + ++L P+++ + L+ C C YK+ S I V + + +
Sbjct: 1 MEFCPKDGSILIPKKEGDKTYLV--CPVCGYKKEVTSLV-----IKEEVKKKEELGKGIA 53
Query: 415 SDPTL-PXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
T+ K CPKC+ E V+F QT +++ ++Y C C + W E
Sbjct: 54 EKETIYSKAKGVKCPKCSSEEVVYFTLQTRASDEAETIFYKCLKCGYTWRE 104
>UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M;
n=3; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanosarcina mazei (Methanosarcina frisia)
Length = 107
Score = 50.4 bits (115), Expect = 3e-05
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCV-YVNKIMHXVXELTHINPDV 411
+QFC +C +M++P++ Y CR C +S+ +V+K E+ + +
Sbjct: 4 MQFCTKCKSMMFPKDGN------YHCRKCGSTIPIESDAKNFVSKAKIDDHEVVVLEGEQ 57
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
S LP T + CP+C + A ++ Q A++ ++ CT C + W E
Sbjct: 58 TSG--LPTT-NAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGYTWRE 105
>UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=11; Ascomycota|Rep: DNA-directed RNA polymerase
III subunit RPC10 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 110
Score = 50.0 bits (114), Expect = 5e-05
Identities = 31/110 (28%), Positives = 45/110 (40%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
+ FC CNNML + V ACR+C Y+ + +Y K + E+ +
Sbjct: 2 LSFCPSCNNMLLITSGDSG-VYTLACRSCPYEFPIEGIEIYDRKKLPR-KEVDDVLGGGW 59
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ T+ C A FFQ Q A++ M +Y C C H W E
Sbjct: 60 DNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
>UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;
Thermoplasmatales|Rep: Transcription factor [TFIIS/RPB9]
- Thermoplasma volcanium
Length = 106
Score = 49.6 bits (113), Expect = 6e-05
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYK-QLADSNCVYVNKIMHXVXELTHINPDVXS 417
FC +C +++ P + Y C +C Y+ + VNK E I +V +
Sbjct: 8 FCPKCGSLMTPVNGR------YVCPSCGYEVSKKKEDLKIVNKSNDK--ETIMIREEVSA 59
Query: 418 DPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+P D +CP+C+H+ A + QT A++ +Y C C + W E
Sbjct: 60 EPL---DSDAICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 105
>UniRef50_A2E2P5 Cluster: DNA-directed RNA polymerase II 15.1 kDa
polypeptide-related protein; n=1; Trichomonas vaginalis
G3|Rep: DNA-directed RNA polymerase II 15.1 kDa
polypeptide-related protein - Trichomonas vaginalis G3
Length = 150
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Frame = +1
Query: 235 IQFCQECNNMLYPR--EDKNNKV--LLYACRNCDYKQLADSNCVYVNKIMHXVXELTHIN 402
+ FC EC ++L PR + +N + L + C C+ + D N VYVN + ++
Sbjct: 25 VYFCSECQSVLTPRVFKKENGEAGKLEFYCAQCNRSEYFDDNLVYVNILKRDASSVS-AT 83
Query: 403 PDVXSDPTLPXTKDHMCPKC-NHREAVFFQGQTXRAEQXMXLYYVCTXC 546
+ SDPTL C C + E V F T E+ M C C
Sbjct: 84 KVLTSDPTL-HRWTVFCNNCRKYEEHVIFNAPTLAGEETMTQLKQCCVC 131
>UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M;
n=4; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 108
Score = 48.4 bits (110), Expect = 1e-04
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI--NPD 408
++FC EC +M+ +++ + C +C Y++ ++ + E + + +
Sbjct: 1 MEFCDECGSMMKTDDER------WVCGSCGYEKARNAEAEQEMAVTTQGQEESEVVDTSE 54
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
V ++ P T CP+C + A + Q A++ ++ CT C+H W E
Sbjct: 55 VDAEDMGPTTGAR-CPECGNERAFYEMKQIRAADESETRFFTCTECEHKWRE 105
>UniRef50_A3DM83 Cluster: Transcription factor S; n=1;
Staphylothermus marinus F1|Rep: Transcription factor S -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 104
Score = 48.0 bits (109), Expect = 2e-04
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +1
Query: 310 CRNCDYKQLA---DSNCVYVN-KIMHXVXELTHINPDVXSDPTLPXTKDHMCPKCNHREA 477
C C Y+ A D ++ KI H E T + + LP T++ CPKC + EA
Sbjct: 14 CTRCGYRVKATEKDLKLYRISVKIEHSNKEKTVVVDEEERLRGLPITREVTCPKCGYHEA 73
Query: 478 VFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
++ QT A++ +Y C C + W E
Sbjct: 74 YYWIVQTRAADEPPTRFYKCRRCGYVWRE 102
>UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os11g0676800 protein -
Oryza sativa subsp. japonica (Rice)
Length = 822
Score = 47.6 bits (108), Expect = 2e-04
Identities = 20/36 (55%), Positives = 22/36 (61%)
Frame = +1
Query: 385 ELTHINPDVXSDPTLPXTKDHMCPKCNHREAVFFQG 492
+ T + DV DPTLP TK C C H EAVFFQG
Sbjct: 190 DFTQVLQDVAGDPTLPRTKSVRCAACGHGEAVFFQG 225
>UniRef50_Q245U9 Cluster: F-box domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: F-box domain
containing protein - Tetrahymena thermophila SB210
Length = 1341
Score = 47.2 bits (107), Expect = 3e-04
Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Frame = +1
Query: 166 KINSKEMSAISLSRKDGGPGYV----GIQFCQECNNMLYPRE--DKNNKVLLYACRNC-- 321
++ + S I+++++ G V G +FC++C + P+ + V++++C +C
Sbjct: 1057 RMQAMRKSQINITKQMSGESEVENCNGFRFCKDCGKLCIPQRASTQEQNVMIFSCSSCGE 1116
Query: 322 -----DYKQLADSNCVYVNKIMHXVXELTHI-NPDVXSDPTLPXTKDHMCPKCNHREAVF 483
+ K + D + +I+ E I N + DP++P K C C V
Sbjct: 1117 RRCVINLKGVRDDQVIKKTQILQS--EAADIKNRALGQDPSMPR-KQMYCRNCKIDSEVV 1173
Query: 484 FQGQTXRAEQXMXLYYVCTXCKHXWT 561
+ + + E+ + + Y+C C WT
Sbjct: 1174 YYYKAGKEEKNIVIQYICKECGFCWT 1199
>UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: RpoM2
- Methanosphaera stadtmanae (strain DSM 3091)
Length = 105
Score = 46.8 bits (106), Expect = 4e-04
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDY-KQLADSNCV-YVNKIMHXVXELTHINPD 408
++FC C +L P+ K +L+ C C+Y K+L+D YV I V + +I
Sbjct: 1 MEFCPNCGKVLLPK-----KGILH-CYGCNYEKKLSDDEKQDYV--INKDVSDKQNIIVT 52
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
S T P T+ +C +C +RE ++ Q R+++ +Y CT C + W
Sbjct: 53 DDSINTHPTTRG-LCYRCGNRELEWWMVQMHRSDEAETRFYRCTKCGNTW 101
>UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase III subunit RPC10 - Schizosaccharomyces
pombe (Fission yeast)
Length = 109
Score = 46.8 bits (106), Expect = 4e-04
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNK--IMHXVXELTHINPD 408
+QFC C N L D+ + + CR C Y S +Y V ++
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY-HFPISTFLYSRHEFAQKEVDDVLGGEEA 58
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
S+ T ++ KC++ A FFQ Q A++ M +Y CT CK W E
Sbjct: 59 FESNQQTEVTCENT--KCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWRE 108
>UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=21; Fungi/Metazoa group|Rep: DNA-directed RNA
polymerase III subunit RPC10 - Homo sapiens (Human)
Length = 108
Score = 46.4 bits (105), Expect = 6e-04
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N L E + + ++C C Y + + N+ + E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFSCNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T + CPKC H A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>UniRef50_Q9LU97 Cluster: Similarity to transcription-associated
zinc ribbon protein; n=2; Arabidopsis thaliana|Rep:
Similarity to transcription-associated zinc ribbon
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 119
Score = 46.0 bits (104), Expect = 7e-04
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYA-CRNC----DYKQLADSNCVYVNKIMHXVXEL--THI 399
FC C ML + K YA C +C + K + D Y EL +
Sbjct: 11 FCNLCGTMLVLKSTK------YAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLF 64
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
++ LP K C KC H E V+ QT A++ YY C C H +TE
Sbjct: 65 GEKTQAEAELPKIKK-ACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118
>UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 119
Score = 46.0 bits (104), Expect = 7e-04
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 307 ACRNCDYKQLADSNCVYVNKIMHXVXELTHINPD-VXSDPTLPXTKDHMCPKCNHREAVF 483
+C+ C + V + + E T + D + +D + DH+C KC H +A +
Sbjct: 31 SCKVCSTRWAVKERVDQVVSRVEKIYERTVADTDGIENDESADAVVDHICTKCGHSKASY 90
Query: 484 FQGQTXRAEQXMXLYYVCTXCK 549
QT A++ ++Y C CK
Sbjct: 91 STMQTRSADEGQTVFYTCLKCK 112
>UniRef50_A0DZF5 Cluster: Chromosome undetermined scaffold_70, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_70,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 149
Score = 45.6 bits (103), Expect = 0.001
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Frame = +1
Query: 226 YVGIQFCQECNNMLYPRED-KNNKVLLYACRNCD----------YKQLADSNCVYVNKIM 372
Y G +FC C N+L P D N ++L + CRN D + + + + + K
Sbjct: 6 YNGWRFCPRCKNLLKPYHDGDNTEILQFKCRNQDCGDNGIIEVKIDKTLNKDALLLKKDY 65
Query: 373 HXVXELTHINPDVXSDPTLPXTK----DHMCP--KCNHREAVFFQGQTXRAEQXMXLYYV 534
+ + + DP++P + +C +CN+ EA++F +T + E+ + + Y+
Sbjct: 66 QAAKAIDITDNTLILDPSMPRKRVICNKQICQLFRCNYDEAIYFL-KTDKNEKEIIIQYI 124
Query: 535 CT----XCKHXWTE 564
C C + WT+
Sbjct: 125 CANKNPICGNKWTQ 138
>UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=10;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
subunit - Pichia stipitis (Yeast)
Length = 111
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/110 (24%), Positives = 42/110 (38%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
+ FC C+NML + Y C C Y+ + ++ K ++ + D
Sbjct: 2 LSFCPNCSNMLLISAGDDGCNRFY-CPTCPYEFKINGLSMFERKKLYRKEVDDVLGGDGA 60
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
D + C +A FFQ Q A++ M +Y C C H W E
Sbjct: 61 WDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCVNCGHKWKE 110
>UniRef50_A2ZGV6 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 122
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = +1
Query: 385 ELTHINPDVXSDPTLPXTKDHMCPKCNHREAVFFQ 489
+ T + DV DPTLP TK C C H EAVFFQ
Sbjct: 23 DFTQVLQDVAGDPTLPRTKSVRCAACGHGEAVFFQ 57
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = +1
Query: 385 ELTHINPDVXSDPTLPXTKDHMCPKCNHREAVFFQ 489
+ T + DV DPTLP TK C C H EAVFFQ
Sbjct: 78 DFTQVLQDVAGDPTLPRTKSVRCAACGHGEAVFFQ 112
>UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit
M/Transcription elongation factor TFIIS; n=1;
Cenarchaeum symbiosum|Rep: DNA-directed RNA polymerase,
subunit M/Transcription elongation factor TFIIS -
Cenarchaeum symbiosum
Length = 103
Score = 45.2 bits (102), Expect = 0.001
Identities = 30/108 (27%), Positives = 44/108 (40%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC +C + L D + C C Y + A K E+ ++ V
Sbjct: 1 MRFCPKCEDRLRKNGDAS------VCPKCGYTESAARGPTKA-KPAEGTPEINVLDGPV- 52
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
D L T C KC H EAV++ QT A++ +Y C C H W
Sbjct: 53 -DEKLLSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIKCSHTW 99
>UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1;
Cryptosporidium parvum Iowa II|Rep: RNA polymerase III
subunit C11 - Cryptosporidium parvum Iowa II
Length = 62
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 448 MCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+CPKC+ EA FFQ Q A++ M +Y C C W E
Sbjct: 23 VCPKCSFSEAYFFQLQIRSADEPMTSFYTCVKCDFKWKE 61
>UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_81,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 118
Score = 44.4 bits (100), Expect = 0.002
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYK-QLADSNCVYV-NKIMHXVXELTHINPDVX 414
FC +C+ ML E + + C C YK + D Y+ + I P
Sbjct: 9 FCPQCHFMLELPEVMD----IIECNRCGYKCSITDYQPKYIISTIKMEPKSWLSNQPQES 64
Query: 415 --SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
SD + + +CPKC+H EA F Q A++ ++Y C C+
Sbjct: 65 KLSDQSHRAVIEQVCPKCSHEEAYFSTAQLRSADEGSTVFYECVKCQ 111
>UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase III
subunit - Entamoeba histolytica HM-1:IMSS
Length = 107
Score = 44.0 bits (99), Expect = 0.003
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N+L L + C C YK + VY +++ I+ + +
Sbjct: 4 FCANCGNLLVVERGTE---LYFKCNTCPYKFTFNKKIVYESELKRK-----QIDAVLGEE 55
Query: 421 PTLPXTKDHM-CPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTE 564
K + C KC H A F Q Q A++ M +Y C C + W +
Sbjct: 56 QWKNAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRD 106
>UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase
subunit - Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 44.0 bits (99), Expect = 0.003
Identities = 28/110 (25%), Positives = 43/110 (39%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC C N+L N++ + C C Y V + K V +
Sbjct: 1 MEFCPTCGNLLRYEGGGNSR---FFCSTCPYVAYIQRQ-VEIKKKQLLVKKSIEAVVTKD 56
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
PT T + CP+C H +A F Q A++ +Y C C+ W E
Sbjct: 57 DIPTAAET-EAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105
>UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=9;
Bilateria|Rep: DNA-directed RNA polymerase subunit -
Caenorhabditis elegans
Length = 108
Score = 44.0 bits (99), Expect = 0.003
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
+ FC EC +L + + + + ++C C Y + ++I + ++ +
Sbjct: 2 LTFCPECGCVL--QIESGEQCMRFSCPACPY--VCPVTQTVTSRIYPKLKDIDDVLGGPG 57
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T D CP C+H A F Q QT A++ ++Y C C H W +
Sbjct: 58 AWANAQVT-DETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108
>UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M;
n=6; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 107
Score = 43.2 bits (97), Expect = 0.005
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSN--CVYVNKIMHXVXELTHINPD 408
+QFC +C +M++ D+ C++C + D + +V+ EL
Sbjct: 1 MQFCDDCGSMMHADGDE------MVCQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEG 54
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ P D C +C H +A + QT A++ ++ C C H W E
Sbjct: 55 SNFEGK-PTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105
>UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n=1;
Thermofilum pendens Hrk 5|Rep: Transcription termination
factor Tfs - Thermofilum pendens (strain Hrk 5)
Length = 109
Score = 42.3 bits (95), Expect = 0.009
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTH-INPDV 411
++FC +C ++ P KVL C C Y + + + ++ H + + V
Sbjct: 1 MEFCPKCGGLMVPSVVNGKKVL--RCSRCGY--IVEKSNPGTYRVSHRIERTPKDVVTLV 56
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
D ++ C C + +A ++ QT ++ +Y+CT C+ + E
Sbjct: 57 DVDVSVLPVVSFKCENCGNDKAYVYELQTRAGDEPATRFYICTKCRKVYRE 107
>UniRef50_UPI00006CB60F Cluster: hypothetical protein
TTHERM_00444250; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00444250 - Tetrahymena
thermophila SB210
Length = 108
Score = 41.9 bits (94), Expect = 0.012
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 1/111 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
+ FC C N L + N ++CR C Y V + H D+
Sbjct: 1 MNFCPLCANALIIQNVGGNN--RFSCRTCTYFYPLLKKIETVTYSRMVKDDTIH---DIS 55
Query: 415 -SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+L KD +CP C R A Q ++ +Y+C C H W +
Sbjct: 56 LQKESLQTDKDMICPACEKRGAYIRLEQDRSLDEGQTQHYICKNCSHTWKD 106
>UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis
thaliana|Rep: T20H2.16 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 122
Score = 41.9 bits (94), Expect = 0.012
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
C KC H E V+ QT A++ YY C C H +TE
Sbjct: 84 CEKCQHPELVYTTRQTRSADEGQTTYYTCPNCGHRFTE 121
>UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=3;
Oryza sativa|Rep: DNA-directed RNA polymerase subunit -
Oryza sativa subsp. japonica (Rice)
Length = 110
Score = 41.9 bits (94), Expect = 0.012
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC C +L + L + C C Y + V +++ E+ I D
Sbjct: 1 MEFCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPVKNKIVKKARLVKK--EVEPIFSDSD 58
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ P T CP+C + EA + Q Q A++ M +Y C C+ W E
Sbjct: 59 AMKNAPKTTT-TCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 109
>UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 120
Score = 41.9 bits (94), Expect = 0.012
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
CP C H EA F Q Q A++ M ++Y C C W E
Sbjct: 82 CPGCAHDEAYFMQIQIRSADEPMSVFYKCVKCARQWRE 119
>UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=22; Eumetazoa|Rep: DNA-directed RNA polymerase
I subunit RPA12 - Homo sapiens (Human)
Length = 126
Score = 41.9 bits (94), Expect = 0.012
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2;
Ostreococcus|Rep: RNA polymerase III subunit C11 -
Ostreococcus tauri
Length = 136
Score = 41.5 bits (93), Expect = 0.016
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 436 TKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
T D CPKC H+ F+ Q A++ ++Y C C H +++
Sbjct: 92 TVDEKCPKCKHKGLNFYTMQLRSADEGQTVFYECPKCNHTFSQ 134
>UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 109
Score = 41.1 bits (92), Expect = 0.021
Identities = 27/108 (25%), Positives = 40/108 (37%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N+L D + CR C++ V + + N D S
Sbjct: 6 FCPACGNLLLV--DTSGDRTQLKCRACNFVMGFVGRTVQSAPLNPLDVKALITNDDAMSF 63
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ C KC H EA F + Q A++ L++ C C + W E
Sbjct: 64 QNKTQAR---CDKCGHNEAFFTEIQIRSADEPATLFFKCCKCGNTWRE 108
>UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep:
Transcription termination factor Tfs - Candidatus
Nitrosopumilus maritimus SCM1
Length = 105
Score = 41.1 bits (92), Expect = 0.021
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC H EA+++ QT A++ +Y CT C++ W
Sbjct: 66 CEKCGHDEAIWWMLQTRSADEPTTQFYRCTKCQYTW 101
>UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 315
Score = 40.3 bits (90), Expect = 0.037
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 436 TKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
T C +C R+ ++Q QT A++ M + CT C H W
Sbjct: 272 TDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTCTNCNHKW 312
>UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 203
Score = 39.9 bits (89), Expect = 0.049
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 448 MCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKH 552
+CP+C+H EA F Q Q A++ + Y C C+H
Sbjct: 163 ICPECSHNEAFFTQFQARSADEGTTVMYECCKCQH 197
>UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like
protein; n=3; Leishmania|Rep: Transcription elongation
factor-like protein - Leishmania major
Length = 473
Score = 39.9 bits (89), Expect = 0.049
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 406 DVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ + L T C +C R F++ QT A++ Y C CK+ WT+
Sbjct: 420 EAADNAMLNITSLFKCGRCGKRHCTFYEQQTRSADEPTTKYITCLDCKNTWTQ 472
>UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5;
Eurotiomycetidae|Rep: Complex: hRPC11 is a small -
Aspergillus niger
Length = 117
Score = 39.9 bits (89), Expect = 0.049
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Frame = +1
Query: 235 IQFCQECNNML-YPREDKNNK----VLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI 399
+ FC C+N L R + + V + CR C Y+ D + + E
Sbjct: 3 LTFCPNCSNALTISRAEPTTRHPLGVNRFECRTCPYQYALDQSWFEKTPMKQKEVEDVFG 62
Query: 400 NPDVXSDPTLPXTKDHMCPK--CNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ ++ T+ CP CN A FFQ Q A++ M + CT C W E
Sbjct: 63 GKEEFANADSMATQ---CPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 116
>UniRef50_Q4DRW2 Cluster: Transcription elongation factor, putative;
n=3; Trypanosoma|Rep: Transcription elongation factor,
putative - Trypanosoma cruzi
Length = 243
Score = 39.5 bits (88), Expect = 0.065
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
CP C R+ + Q QT A++ M ++ +C C H W
Sbjct: 205 CPSCKARDCSWTQKQTRSADEPMTVFCICNVCDHKW 240
>UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase I
subunit - Dictyostelium discoideum AX4
Length = 324
Score = 39.1 bits (87), Expect = 0.086
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Frame = +1
Query: 241 FCQECNNML-YPREDKNNKVLLYACRNCDY-KQLADS-NCVYVNKIMHXVXELTHINPDV 411
FC +CN L YP+ + C C + K AD N V K + + N +
Sbjct: 218 FCPQCNAFLNYPKNFSQH----ITCSLCTFSKSKADLLNKKIVTK--SSLFNKSIKNKEE 271
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXC 546
++ D CP+C H + F QT A++ ++Y C C
Sbjct: 272 DNEEDRGAIIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDCVKC 316
>UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1;
Methanosaeta thermophila PT|Rep: Transcription factor
TFIIS - Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 85
Score = 39.1 bits (87), Expect = 0.086
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 310 CRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPT-LPXTKDHMCPKCNHREAVFF 486
CR C + SN N I+ +L P + + LP TK CP+C + A ++
Sbjct: 3 CRKCGMRVPKSSN----NPIVSVTNKLERTVPVLEQESAGLPTTKAK-CPECGNDTAYWW 57
Query: 487 QGQTXRAEQXMXLYYVCTXCKHXWTE 564
Q A++ ++ CT C + W E
Sbjct: 58 LRQLRAADESEVRFFRCTKCGNTWRE 83
>UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3;
Euryarchaeota|Rep: Transcription factor S -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 107
Score = 38.7 bits (86), Expect = 0.11
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC++C +L N+ + C +C +++ E+ ++ D S
Sbjct: 4 FCEKCGKLL------KNQAGSFICTSCGWEKEGHGETKMKITDKRKEKEIVIVD-DTESV 56
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTE 564
TLP T CP C + EA ++ Q A++ ++ CT C H W E
Sbjct: 57 RTLP-TIAVKCPNCGNGEAFWWLRQLRSADESEVRFFRCTNSKCNHTWRE 105
>UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS;
n=2; Singapore grouper iridovirus|Rep: Transcription
elongation factor TFIIS - Singapore grouper iridovirus
Length = 92
Score = 38.3 bits (85), Expect = 0.15
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
CPKC ++ Q QT A++ M ++ VC+ C WT+
Sbjct: 55 CPKCGCKKVHVVQRQTRSADEPMTVFAVCSNCGKRWTQ 92
>UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_572_32225_32536 - Giardia lamblia
ATCC 50803
Length = 103
Score = 37.9 bits (84), Expect = 0.20
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 442 DHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
D CPKC+H +A + Q A++ +++ C C H +
Sbjct: 61 DETCPKCHHGQAYYASMQMRSADEGQTIFFECCSCGHKY 99
>UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII,
putative; n=1; Theileria parva|Rep: Transcription
elongation factor SII, putative - Theileria parva
Length = 324
Score = 37.1 bits (82), Expect = 0.35
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KCN + ++Q QT +++ M + C CK+ W
Sbjct: 287 CNKCNSKVTTYYQLQTRSSDEPMTTFVTCLNCKNRW 322
>UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase I subunit RPA12 - Schizosaccharomyces
pombe (Fission yeast)
Length = 119
Score = 37.1 bits (82), Expect = 0.35
Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCD--YKQLADSNCVYVNK----IMHXVXELTHIN 402
FC EC N+L ++ C C Y +N V K +L H
Sbjct: 9 FCSECGNLL-----ESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSI 63
Query: 403 PDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
V S T + CPKC + F Q A++ ++Y C C + ++
Sbjct: 64 VQVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFS 116
>UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=3;
Ranavirus|Rep: Transcription elongation factor SII -
Frog virus 3 (FV3)
Length = 92
Score = 36.3 bits (80), Expect = 0.61
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
CP C R Q QT A++ M L+ +C+ C WT
Sbjct: 55 CPGCGSRRVHALQRQTRSADEPMTLFAMCSECGKRWT 91
>UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE III 12.5kDa SUBUNIT - Encephalitozoon
cuniculi
Length = 104
Score = 36.3 bits (80), Expect = 0.61
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C++ML ++ L +C+ C Y +++ + + + V D
Sbjct: 3 FCPLCSSMLVVKKQAIGNEL--SCKMCGYLYAISEE---ISRTVGMTPKKSE--GFVDED 55
Query: 421 PTLPX-TKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+L TK +C E F + QT A++ M ++Y C CK W E
Sbjct: 56 ESLKFVTKCGKRCECGSEEVSFVELQTRSADEPMTIFYKCIRCKKVWKE 104
>UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_741_50228_49188 - Giardia lamblia
ATCC 50803
Length = 346
Score = 35.9 bits (79), Expect = 0.80
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC V + QT A++ + Y C+ C H W
Sbjct: 308 CKKCKQETVVRLEKQTRSADEATTIEYTCSSCGHRW 343
>UniRef50_Q586X9 Cluster: Transcription elongation factor S-II,
putative; n=1; Trypanosoma brucei|Rep: Transcription
elongation factor S-II, putative - Trypanosoma brucei
Length = 467
Score = 35.9 bits (79), Expect = 0.80
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
CP+C+ RE + + Q A++ + C CKH W+E
Sbjct: 429 CPECHGRECEWRELQIRSADEPTTKFIKCIKCKHNWSE 466
>UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II,
putative; n=2; Trypanosoma cruzi|Rep: Transcription
elongation factor S-II, putative - Trypanosoma cruzi
Length = 477
Score = 35.9 bits (79), Expect = 0.80
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
CP C +++ QT A++ + C CK+ WT
Sbjct: 439 CPNCGKNRCSYYEQQTRSADEPTTKFVTCLECKYVWT 475
>UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 35.9 bits (79), Expect = 0.80
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 442 DHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
D C KC +A F++ QT A++ + + C C H W
Sbjct: 62 DEQCDKCGCLKAFFWEFQTRGADEQSTISFECIKCGHKW 100
>UniRef50_Q2U4B9 Cluster: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1; n=8;
Eurotiomycetidae|Rep: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1 -
Aspergillus oryzae
Length = 304
Score = 35.9 bits (79), Expect = 0.80
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
C KC R+ + + QT A++ M L+ C C W +
Sbjct: 267 CGKCGQRKVTYTEAQTRSADEPMTLFCTCLNCGKSWKQ 304
>UniRef50_A3LRC5 Cluster: Predicted protein; n=5;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 294
Score = 35.9 bits (79), Expect = 0.80
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC H++ ++Q QT A++ + + C C + W
Sbjct: 256 CGKCKHKKVSYYQMQTRSADEPLTTFCTCENCGNRW 291
>UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=2;
Giardia intestinalis|Rep: DNA-directed RNA polymerase
subunit - Giardia lamblia ATCC 50803
Length = 105
Score = 35.5 bits (78), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
CP C +A + Q Q +++ M +Y C C H W E
Sbjct: 67 CPVCAFPDAFWIQMQIRSSDEPMSRFYRCCQCAHQWRE 104
>UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1;
Tetrahymena thermophila SB210|Rep: Transcription factor
S-II - Tetrahymena thermophila SB210
Length = 136
Score = 35.5 bits (78), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
CP C H F+ QT A++ ++Y C CK +T
Sbjct: 97 CPDCGHDTLYFWTVQTRSADEGSTVFYECQDCKFKFT 133
>UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 115
Score = 35.5 bits (78), Expect = 1.1
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 3/115 (2%)
Frame = +1
Query: 229 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI-NP 405
+ IQFC +C + L P N +V C N + L + V ++ L N
Sbjct: 1 MAIQFCNDCGDTL-PISG-NPEVKCDCCGNMNKNTLINVTTVSSSRDFDSPLRLKEYGNK 58
Query: 406 D-VXSDPTLPXTK-DHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
D + S P + D C C + + QT A++ ++Y C C W E
Sbjct: 59 DAMASRPEMNWPSIDENCRFCPSKTVRYTTLQTRGADEGSTVFYFCEGCSQKWKE 113
>UniRef50_P49373 Cluster: Transcription elongation factor S-II; n=1;
Schizosaccharomyces pombe|Rep: Transcription elongation
factor S-II - Schizosaccharomyces pombe (Fission yeast)
Length = 293
Score = 35.5 bits (78), Expect = 1.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC ++ ++Q QT A++ M + CT C + W
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
>UniRef50_Q4T1I2 Cluster: Chromosome undetermined SCAF10575, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF10575,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 147
Score = 35.1 bits (77), Expect = 1.4
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 3/113 (2%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYK-QLA--DSNCVYVNKIMHXVXELTHINP 405
+ FC EC N+L P ++ C C + +A D + +++ + +
Sbjct: 20 LNFCPECGNILPPPGLQDT----VRCPRCSFSIPVAEFDGQQIRSTVVLNPAEKSAAVVE 75
Query: 406 DVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
+ SD P D C +CN V+ Q A++ +++ C C+ E
Sbjct: 76 EEDSDLQGPVI-DRRCVRCNKEGMVYHTRQMRSADEGQTVFFTCVHCRRRTLE 127
>UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza
sativa|Rep: Os03g0711700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 156
Score = 35.1 bits (77), Expect = 1.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 436 TKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
T + C KC + E ++ Q A++ ++Y C C+H + E
Sbjct: 112 TVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNE 154
>UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=8;
Endopterygota|Rep: DNA-directed RNA polymerase subunit -
Drosophila melanogaster (Fruit fly)
Length = 120
Score = 35.1 bits (77), Expect = 1.4
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C ++L + K N + C NC + D VY + +P +
Sbjct: 10 FCPSCGSILPELQVKGNVI----CYNCKKEFQPD---VYSGEKSEFTIHFNTYDPSKVFN 62
Query: 421 PTLPXTK--------DHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
T ++ + CPKCNH + + Q A++ +++ C CK +E
Sbjct: 63 RTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESE 118
>UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n=6;
Pezizomycotina|Rep: Transcription elongation factor S-II
- Botryotinia fuckeliana B05.10
Length = 301
Score = 35.1 bits (77), Expect = 1.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC ++ + Q QT A++ M + C C H W
Sbjct: 263 CGKCGQKKVSYSQAQTRSADEPMTTFCECQVCGHRW 298
>UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to
ENSANGP00000027484; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000027484
- Strongylocentrotus purpuratus
Length = 255
Score = 34.7 bits (76), Expect = 1.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ M + C C H W
Sbjct: 217 CGKCRKKNCTYNQMQTRSADEPMTTFVFCNDCGHRW 252
>UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS;
n=2; Moneuplotes crassus|Rep: Transcription elongation
factor TFIIS - Euplotes crassus
Length = 328
Score = 34.7 bits (76), Expect = 1.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 445 HMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKH 552
+ C KC ++ F++ QT A++ M + C C H
Sbjct: 289 YTCEKCKSKKTTFYEQQTRSADEPMTTFVQCLMCSH 324
>UniRef50_Q4UH96 Cluster: Transcription elongation factor, putative;
n=1; Theileria annulata|Rep: Transcription elongation
factor, putative - Theileria annulata
Length = 418
Score = 34.7 bits (76), Expect = 1.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KCN + ++Q QT +++ M + C C + W
Sbjct: 381 CNKCNSKITTYYQLQTRSSDEPMTTFVTCLNCNNRW 416
>UniRef50_Q98TK0 Cluster: RNA polymerase III smallest subunit; n=1;
Platichthys flesus|Rep: RNA polymerase III smallest
subunit - Platichthys flesus (European flounder)
Length = 87
Score = 34.3 bits (75), Expect = 2.4
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +1
Query: 280 DKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLPXTKDHMCPK 459
++ K + +AC C Y Y + + E+ + + + T + CP
Sbjct: 6 EEGQKCMRFACNTCPYVHSITRKVNY--RKFPKLKEVDDVLGGAKAWENVDSTPE-TCPT 62
Query: 460 CNHREAVFFQGQTXRAEQXMXLYY 531
C H A F Q QT A++ M +Y
Sbjct: 63 CGHLRAYFMQIQTRSADEPMTTFY 86
>UniRef50_P23193 Cluster: Transcription elongation factor A protein
1; n=41; Eumetazoa|Rep: Transcription elongation factor
A protein 1 - Homo sapiens (Human)
Length = 301
Score = 34.3 bits (75), Expect = 2.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ M + VC C + W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>UniRef50_UPI00006CA3DD Cluster: Response regulator receiver domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Response regulator receiver domain containing
protein - Tetrahymena thermophila SB210
Length = 1434
Score = 33.9 bits (74), Expect = 3.2
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 163 FKINSKEMSAISLSRKDGGPGYVGIQFCQECNNMLYPREDKNNK-----VLLYACRNCDY 327
FK+N+K+ S+ + ++F Q CNN+ ED + K + L + + +
Sbjct: 1040 FKLNAKDQKPKSIYNRQ-----CSLEFQQLCNNLTSTEEDCSEKKQAISIPLMSTKILEE 1094
Query: 328 KQLADSNCVYVNKIMHXVXELTHIN 402
K L+ +NC + +H TH+N
Sbjct: 1095 KNLSANNCGSNQQFIHHTQSDTHLN 1119
>UniRef50_Q197A5 Cluster: Putative uncharacterized protein; n=1;
Aedes taeniorhynchus iridescent virus|Rep: Putative
uncharacterized protein - Aedes taeniorhynchus
iridescent virus
Length = 137
Score = 33.9 bits (74), Expect = 3.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
C KC+ + ++F QT ++ ++ C+ CK WTE
Sbjct: 100 CGKCDCTKILWFSKQTRSMDEPTTIFASCSNCKTRWTE 137
>UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II,
putative; n=1; Toxoplasma gondii RH|Rep: Transcription
elongation factor s-II, putative - Toxoplasma gondii RH
Length = 418
Score = 33.9 bits (74), Expect = 3.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + V+FQ QT +++ M + C C + W
Sbjct: 381 CFKCRTTKTVYFQMQTRSSDEPMTTFVTCLECGNRW 416
>UniRef50_Q8I2A5 Cluster: Putative uncharacterized protein PFA0175w;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFA0175w - Plasmodium falciparum
(isolate 3D7)
Length = 1817
Score = 33.5 bits (73), Expect = 4.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 280 DKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI 399
DKNNK +LY+C C K L ++ KI + +L +I
Sbjct: 250 DKNNKQVLYSCLTCIIKNLLENTIKQNKKIKYKTLKLLYI 289
>UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=7;
Pezizomycotina|Rep: DNA-directed RNA polymerase subunit
- Aspergillus clavatus
Length = 147
Score = 33.5 bits (73), Expect = 4.3
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXEL----THINPD 408
FC +C N+L KVLL K + V +K L + +
Sbjct: 9 FCTDCGNLLPESTGDPTKVLLCDVCGARNKDTVPNTIVSESKPNAFPSALRAKRSAVQTL 68
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC 537
D H C +C +E F Q A++ ++Y C
Sbjct: 69 TAEDKRTEALTQHTCARCGRKEMYFTTVQLRSADEGSTVFYTC 111
>UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=8;
Chlorovirus|Rep: Transcription elongation factor SII -
Chlorella virus
Length = 180
Score = 33.1 bits (72), Expect = 5.7
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
C KC R+ +++ QT A++ M ++ C C W +
Sbjct: 143 CGKCKSRKTSYYEMQTRSADEPMTVFAKCHSCGSRWKQ 180
>UniRef50_A0DNJ2 Cluster: Chromosome undetermined scaffold_58, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_58,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 3634
Score = 33.1 bits (72), Expect = 5.7
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
+ Q+CN Y +++N Y C NC AD NCV + + + E+ IN V
Sbjct: 438 YFQQCNQGQYTIDNENCLNCHYNCYNC--LNQAD-NCVECHN-GYYILEVNQINNCVVEC 493
Query: 421 PTLPXTKDHMCPKCN 465
P ++ C KCN
Sbjct: 494 PLSYYVQNKQCLKCN 508
>UniRef50_Q15560 Cluster: Transcription elongation factor A protein
2; n=55; Coelomata|Rep: Transcription elongation factor
A protein 2 - Homo sapiens (Human)
Length = 299
Score = 33.1 bits (72), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT +++ M + VC C + W
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>UniRef50_A5CXS0 Cluster: Primosomal protein N'; n=2;
sulfur-oxidizing symbionts|Rep: Primosomal protein N' -
Vesicomyosocius okutanii subsp. Calyptogena okutanii
(strain HA)
Length = 680
Score = 30.7 bits (66), Expect(2) = 6.2
Identities = 17/80 (21%), Positives = 33/80 (41%)
Frame = +1
Query: 301 LYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLPXTKDHMCPKCNHREAV 480
+Y C C++K + C + + M + + D +P +H+CP C +
Sbjct: 384 IYYCTQCNWK----AQCNHCDSTMVYHRHINRLKCHHCGDEKIP---EHVCPNCTKQSLK 436
Query: 481 FFQGQTXRAEQXMXLYYVCT 540
T + E+ + Y+V T
Sbjct: 437 ILGYGTEKLEETLYSYFVDT 456
Score = 21.0 bits (42), Expect(2) = 6.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +1
Query: 223 GYVGIQFCQECN 258
GY I +C +CN
Sbjct: 380 GYAPIYYCTQCN 391
>UniRef50_Q8IK94 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 2943
Score = 32.3 bits (70), Expect = 9.9
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = -2
Query: 160 VLFKDNITTSNRFLTLNLTIDMKDYSRGVVIKFYVYHYVHSWCFCLV 20
+ + +NIT S F+ + ++++ ++ VIK Y Y+H++ F +
Sbjct: 1718 LFYDENITKSKNFVNITFSVNLSYFNYTEVIKVYSEFYMHTFDFVYI 1764
>UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;
n=3; Leishmania|Rep: Transcription factor S-II-like
protein - Leishmania major
Length = 254
Score = 32.3 bits (70), Expect = 9.9
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 439 KDHMCPKCN-HREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
++ C C HR F QT A++ +++ CT C W +
Sbjct: 210 EEAFCEMCGVHRPCKTFARQTRSADEGQTIFFQCTKCSSEWQQ 252
>UniRef50_Q06AK7 Cluster: DNA topoisomerase 1; n=69; Firmicutes|Rep:
DNA topoisomerase 1 - Staphylococcus aureus
Length = 689
Score = 32.3 bits (70), Expect = 9.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 244 CQECNNMLYPREDKNNKVLLYACRNCDYKQLA 339
C +CN L E+K K C NCDYK+ A
Sbjct: 658 CPKCNQYLV--ENKKGKTTQVICSNCDYKEAA 687
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,518,122
Number of Sequences: 1657284
Number of extensions: 8469217
Number of successful extensions: 18519
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 17866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18470
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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