Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_K22
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 114 1e-26
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 47 3e-06
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 36 0.005
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 36 0.006
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 26 3.9
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 3.9
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 26 5.2
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 9.0
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 114 bits (274), Expect = 1e-26
Identities = 51/109 (46%), Positives = 71/109 (65%)
Frame = +1
Query: 238 QFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXS 417
Q+C ECNNMLYPREDK ++VL ACRNCDY ++A ++ VY +++ E T ++ D +
Sbjct: 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDAST 64
Query: 418 DPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
DPTLP + D CP+C+ EAVF+Q + R + M L YVC C + E
Sbjct: 65 DPTLPRS-DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 46.8 bits (106), Expect = 3e-06
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNK--IMHXVXELTHINPD 408
+QFC C N L D+ + + CR C Y S +Y V ++
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY-HFPISTFLYSRHEFAQKEVDDVLGGEEA 58
Query: 409 VXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
S+ T ++ KC++ A FFQ Q A++ M +Y CT CK W E
Sbjct: 59 FESNQQTEVTCENT--KCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWRE 108
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 35.9 bits (79), Expect = 0.005
Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCD--YKQLADSNCVYVNK----IMHXVXELTHIN 402
FC EC N+L ++ C C Y +N V K +L H
Sbjct: 9 FCSECGNLL-----ESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSI 63
Query: 403 PDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWT 561
V S T + CPKC + F Q A++ ++Y C C + ++
Sbjct: 64 VQVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFS 116
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 35.5 bits (78), Expect = 0.006
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC ++ ++Q QT A++ M + CT C + W
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 561 CPXMFTXCTHIIQXHXLFGAXRLALKEYCFSVITL 457
CP F+ +HI + LF L L FS +TL
Sbjct: 44 CPAKFSKISHIFKKTPLFDQKSLILYLLWFSTLTL 78
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 160 HFK-INSKEMSAISLSRKDGGPG 225
HF+ +S S SLSRKD GPG
Sbjct: 67 HFRPASSLSFSPSSLSRKDSGPG 89
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 352 RNLNPQVVYNHNFCTRTAKLCYFYLRAGKAYCYI 251
+ L+PQ + + C++ + FY R GK YC++
Sbjct: 276 KKLHPQC-FKCDTCSQNLEHVGFYYREGKFYCHL 308
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 214 GGPGYVGIQFCQECNNMLYPRE 279
G PG +C EC M Y R+
Sbjct: 62 GAPGVSDCYYCSECTRMEYDRD 83
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 218 VLVMSAYNFVKNVTICFTRA--KIKITKFCCTRAEIVIINNLRIQIAFTSTKL 370
+ +S F+ +T K K TK + +IV NLR AFT L
Sbjct: 67 IKTLSLKKFIPEITAAIVEGMMKCKATKDILSSVKIVWALNLRFSTAFTGPML 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,267
Number of Sequences: 5004
Number of extensions: 38114
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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