Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_K22
(629 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit... 189 6e-48
BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DN... 189 6e-48
BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DN... 189 6e-48
AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA ... 189 6e-48
DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA polyme... 48 4e-05
BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (D... 48 4e-05
AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed R... 48 4e-05
AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein. 48 4e-05
AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subu... 48 4e-05
Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA... 46 8e-05
AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subu... 46 8e-05
CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein. 42 0.002
BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain cont... 42 0.002
BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain cont... 42 0.002
BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain cont... 42 0.002
AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain cont... 42 0.002
AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain cont... 42 0.002
AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain cont... 42 0.002
AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase ... 42 0.002
AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase ... 42 0.002
AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associate... 42 0.002
AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain cont... 42 0.002
X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation ... 34 0.36
X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation ... 34 0.36
M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation ... 34 0.36
CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein. 34 0.36
BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongatio... 34 0.36
BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongatio... 34 0.36
D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation ... 33 0.83
CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein. 33 0.83
BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongatio... 33 0.83
AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongatio... 33 0.83
AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongatio... 33 0.83
AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongatio... 33 0.83
X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation ... 33 1.1
>Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit
14.5 kD protein.
Length = 125
Score = 189 bits (461), Expect = 6e-48
Identities = 80/117 (68%), Positives = 92/117 (78%), Gaps = 2/117 (1%)
Frame = +1
Query: 220 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI 399
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI H V ELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTX--CKHXWTE 564
DV DPTLP T+DH C KC H+EAVFFQ + RAE M LYYVCT C H WTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 189 bits (461), Expect = 6e-48
Identities = 80/117 (68%), Positives = 92/117 (78%), Gaps = 2/117 (1%)
Frame = +1
Query: 220 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI 399
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI H V ELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTX--CKHXWTE 564
DV DPTLP T+DH C KC H+EAVFFQ + RAE M LYYVCT C H WTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 189 bits (461), Expect = 6e-48
Identities = 80/117 (68%), Positives = 92/117 (78%), Gaps = 2/117 (1%)
Frame = +1
Query: 220 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI 399
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI H V ELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTX--CKHXWTE 564
DV DPTLP T+DH C KC H+EAVFFQ + RAE M LYYVCT C H WTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA
POLYMERASE II 14.5 KD SUBUNIT protein.
Length = 125
Score = 189 bits (461), Expect = 6e-48
Identities = 80/117 (68%), Positives = 92/117 (78%), Gaps = 2/117 (1%)
Frame = +1
Query: 220 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHI 399
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI H V ELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTX--CKHXWTE 564
DV DPTLP T+DH C KC H+EAVFFQ + RAE M LYYVCT C H WTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA
polymerases III 12.5 kDa polypeptide protein.
Length = 108
Score = 47.6 bits (108), Expect = 4e-05
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N L E + + +AC C Y + + N+ + E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T + CPKC H A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 47.6 bits (108), Expect = 4e-05
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N L E + + +AC C Y + + N+ + E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T + CPKC H A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed RNA
polymerase III C11 subunit protein.
Length = 108
Score = 47.6 bits (108), Expect = 4e-05
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N L E + + +AC C Y + + N+ + E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T + CPKC H A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein.
Length = 108
Score = 47.6 bits (108), Expect = 4e-05
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N L E + + +AC C Y + + N+ + E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T + CPKC H A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subunit
protein.
Length = 108
Score = 47.6 bits (108), Expect = 4e-05
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N L E + + +AC C Y + + N+ + E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T + CPKC H A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 46.4 bits (105), Expect = 8e-05
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N L E + + ++C C Y + + N+ + E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFSCNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T + CPKC H A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subunit
CII protein.
Length = 108
Score = 46.4 bits (105), Expect = 8e-05
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N L E + + ++C C Y + + N+ + E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFSCNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
+ T + CPKC H A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associated
zinc ribbon protein protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain
containing, 1 protein.
Length = 126
Score = 41.9 bits (94), Expect = 0.002
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
+ FC +C ++L P + V C N + + + V + + H + ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCK 549
+ P D CP+C H + Q A++ ++Y CT CK
Sbjct: 75 GPECQGPVV-DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCK 119
>X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 34.3 bits (75), Expect = 0.36
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ M + VC C + W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation
factor protein.
Length = 280
Score = 34.3 bits (75), Expect = 0.36
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ M + VC C + W
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 277
>M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation
factor SII protein.
Length = 301
Score = 34.3 bits (75), Expect = 0.36
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ M + VC C + W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein.
Length = 301
Score = 34.3 bits (75), Expect = 0.36
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ M + VC C + W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 34.3 bits (75), Expect = 0.36
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ M + VC C + W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 34.3 bits (75), Expect = 0.36
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ M + VC C + W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation
factor S-II, hS-II-T1 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.83
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT +++ M + VC C + W
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.83
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT +++ M + VC C + W
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.83
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT +++ M + VC C + W
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 272
Score = 33.1 bits (72), Expect = 0.83
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT +++ M + VC C + W
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 269
>AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 270
Score = 33.1 bits (72), Expect = 0.83
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT +++ M + VC C + W
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 269
>AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.83
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT +++ M + VC C + W
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 32.7 bits (71), Expect = 1.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 451 CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXW 558
C KC + + Q QT A++ + + VC C + W
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRW 298
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,454,996
Number of Sequences: 237096
Number of extensions: 1250299
Number of successful extensions: 2298
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2298
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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