Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_K22
(629 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA... 216 2e-56
S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase... 213 2e-55
S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase... 211 5e-55
AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-P... 54 2e-07
AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-P... 35 0.079
AY119065-1|AAM50925.1| 186|Drosophila melanogaster LP07781p pro... 29 5.2
AE014297-3069|AAF55935.1| 186|Drosophila melanogaster CG17819-P... 29 5.2
AY051772-1|AAK93196.1| 673|Drosophila melanogaster LD29879p pro... 29 6.9
AE013599-3917|AAF47240.1| 673|Drosophila melanogaster CG4707-PA... 29 6.9
>AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA
protein.
Length = 129
Score = 216 bits (528), Expect = 2e-56
Identities = 92/118 (77%), Positives = 101/118 (85%), Gaps = 2/118 (1%)
Frame = +1
Query: 217 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTH 396
GPG+VGI+FCQECNNMLYP+EDK NK+LLYACRNCDYKQ ADSNC+YVNKIMH + ELTH
Sbjct: 12 GPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTH 71
Query: 397 INPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTE 564
I PDV SDPTLP T+DH CPKC+HREAVFFQ QT RAE+ M LYYVCT C H WTE
Sbjct: 72 IVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase II
subunit 9 protein.
Length = 129
Score = 213 bits (520), Expect = 2e-55
Identities = 91/118 (77%), Positives = 100/118 (84%), Gaps = 2/118 (1%)
Frame = +1
Query: 217 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTH 396
GPG+VGI+FCQECNNMLYP+EDK NK+LLYACRNCDYKQ ADSNC+YVNKIMH + ELTH
Sbjct: 12 GPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTH 71
Query: 397 INPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTE 564
I PDV SDPTLP T+DH CPKC+HREAV FQ QT RAE+ M LYYVCT C H WTE
Sbjct: 72 IVPDVISDPTLPRTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase II
15-kda subunit protein.
Length = 129
Score = 211 bits (516), Expect = 5e-55
Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 2/118 (1%)
Frame = +1
Query: 217 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTH 396
GPG+VGI+FCQECNNMLYP+EDK NK+LLYACRNCDYKQ +SNC+YVNKIMH + ELTH
Sbjct: 12 GPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKIMHEIDELTH 71
Query: 397 INPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTE 564
I PDV SDPTLP T+DH CPKC+HREAVFF+ QT RAE+ M LYYVCT C H WTE
Sbjct: 72 IVPDVISDPTLPRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-PA,
isoform A protein.
Length = 108
Score = 54.0 bits (124), Expect = 2e-07
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSD 420
FC C N+L ED N + C C Y ++ K + E+ H+ +
Sbjct: 4 FCPSCGNILIIEEDTNCH--RFTCNTCPY--ISKIRRKISTKTFPRLKEVDHVLGGKAAW 59
Query: 421 PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCT--XCKHXWTE 564
+ T D CP C H+ A F Q QT A++ M +Y C C H W +
Sbjct: 60 ENVDST-DAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
>AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-PA
protein.
Length = 120
Score = 35.1 bits (77), Expect = 0.079
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYACRN---CDYKQLADSNCVYVNKIMHXVXELTHINPDV 411
FC C ++L + K N V+ Y C+ D S +
Sbjct: 10 FCPSCGSILPELQVKGN-VICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRES 68
Query: 412 XSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
SD P + CPKCNH + + Q A++ +++ C CK +E
Sbjct: 69 ESDADGPVV-ERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESE 118
>AY119065-1|AAM50925.1| 186|Drosophila melanogaster LP07781p
protein.
Length = 186
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 256 NNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMH 375
N ++P+ K VL++ + D +L+++ CV + +MH
Sbjct: 78 NRQIWPKYYKKVNVLIFVLDSTDALRLSEARCVLCDVLMH 117
>AE014297-3069|AAF55935.1| 186|Drosophila melanogaster CG17819-PA
protein.
Length = 186
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 256 NNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMH 375
N ++P+ K VL++ + D +L+++ CV + +MH
Sbjct: 78 NRQIWPKYYKKVNVLIFVLDSTDALRLSEARCVLCDVLMH 117
>AY051772-1|AAK93196.1| 673|Drosophila melanogaster LD29879p
protein.
Length = 673
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 253 CNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLP 432
C + R+ VL++ +N D+ + V+ + V E TH NP+V ++P
Sbjct: 365 CGRKFHLRKALAEHVLVH--KNPDHFMCSQCGRVFQDSRALEVHEQTHTNPEVKAEP--K 420
Query: 433 XTKDHMCPKC 462
+ + C KC
Sbjct: 421 EKRIYQCEKC 430
>AE013599-3917|AAF47240.1| 673|Drosophila melanogaster CG4707-PA
protein.
Length = 673
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 253 CNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLP 432
C + R+ VL++ +N D+ + V+ + V E TH NP+V ++P
Sbjct: 365 CGRKFHLRKALAEHVLVH--KNPDHFMCSQCGRVFQDSRALEVHEQTHTNPEVKAEP--K 420
Query: 433 XTKDHMCPKC 462
+ + C KC
Sbjct: 421 EKRIYQCEKC 430
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,713,470
Number of Sequences: 53049
Number of extensions: 402623
Number of successful extensions: 743
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -