Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_K22
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16980.1 68416.m02169 DNA-directed RNA polymerase II, putativ... 148 3e-36
At4g16265.1 68417.m02467 DNA-directed RNA polymerase II, putativ... 145 2e-35
At3g25940.1 68416.m03233 transcription factor S-II (TFIIS) domai... 46 3e-05
At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family ... 44 8e-05
At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family ... 44 1e-04
At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing ... 29 3.4
At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing ... 28 4.4
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic... 28 5.9
At5g12330.3 68418.m01451 lateral root primordium 1 (LRP1) identi... 27 7.8
At5g12330.2 68418.m01450 lateral root primordium 1 (LRP1) identi... 27 7.8
At5g12330.1 68418.m01449 lateral root primordium 1 (LRP1) identi... 27 7.8
At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing ... 27 7.8
>At3g16980.1 68416.m02169 DNA-directed RNA polymerase II, putative
similar to SP|P36958 DNA-directed RNA polymerase II 15.1
kDa polypeptide (EC 2.7.7.6) {Drosophila melanogaster};
contains Pfam profile PF02150: RNA polymerases M/15 Kd
subunit
Length = 114
Score = 148 bits (359), Expect = 3e-36
Identities = 65/112 (58%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC+ECNN+LYP+EDK K+LLYACRNCD++++AD++CVY N++ H V E T I DV
Sbjct: 4 MKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVA 63
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
SDPTLP TK C KC HREAVFFQ T R E+ M L++VC C H W E
Sbjct: 64 SDPTLPRTKAVRCSKCQHREAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRE 114
>At4g16265.1 68417.m02467 DNA-directed RNA polymerase II, putative
similar to SP|P36958 DNA-directed RNA polymerase II 15.1
kDa polypeptide (EC 2.7.7.6) {Drosophila melanogaster};
contains Pfam profile PF02150: RNA polymerases M/15 Kd
subunit
Length = 114
Score = 145 bits (352), Expect = 2e-35
Identities = 64/112 (57%), Positives = 79/112 (70%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC+ECNN+LYP+EDK +LLYACRNCD+++ AD+NCVY N++ H V E T I DV
Sbjct: 4 MKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILSDVA 63
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVC--TXCKHXWTE 564
SDPTLP TK C KC H EAVFFQ T R E+ M L++VC C H W E
Sbjct: 64 SDPTLPRTKAVRCAKCQHGEAVFFQA-TARGEEGMTLFFVCCNPNCSHRWRE 114
>At3g25940.1 68416.m03233 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|O94703
DNA-directed RNA polymerase I 13.1 kDa polypeptide (EC
2.7.7.6) {Schizosaccharomyces pombe}; contains Pfam
profile PF01096: Transcription factor S-II (TFIIS)
Length = 119
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Frame = +1
Query: 241 FCQECNNMLYPREDKNNKVLLYA-CRNC----DYKQLADSNCVYVNKIMHXVXEL--THI 399
FC C ML + K YA C +C + K + D Y EL +
Sbjct: 11 FCNLCGTMLVLKSTK------YAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLF 64
Query: 400 NPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
++ LP K C KC H E V+ QT A++ YY C C H +TE
Sbjct: 65 GEKTQAEAELPKIKK-ACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118
>At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family
protein similar to SP|Q9Y2Y1 DNA-directed RNA
polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III C11 subunit) {Homo sapiens}; contains
Pfam profiles PF02150: RNA polymerases M/15 Kd subunit,
PF01096: Transcription factor S-II (TFIIS)
Length = 106
Score = 44.0 bits (99), Expect = 8e-05
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC C N+L +++ + C C Y + V + K V + I P V
Sbjct: 1 MEFCPTCGNLLRYEGGGSSR---FFCSTCPYVANIERR-VEIKKKQLLVKK--SIEPVVT 54
Query: 415 SD--PTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
D PT T + CP+C H +A F Q A++ +Y C C+ W E
Sbjct: 55 KDDIPTAAET-EAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105
>At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family
protein similar to SP|O13896 DNA-directed RNA
polymerases III 12.5 kDa polypeptide (EC 2.7.7.6)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF02150: RNA polymerases M/15 Kd subunit, PF01096:
Transcription factor S-II (TFIIS)
Length = 106
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/110 (25%), Positives = 43/110 (39%)
Frame = +1
Query: 235 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVX 414
++FC C N+L N++ + C C Y V + K V +
Sbjct: 1 MEFCPTCGNLLRYEGGGNSR---FFCSTCPYVAYIQRQ-VEIKKKQLLVKKSIEAVVTKD 56
Query: 415 SDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
PT T + CP+C H +A F Q A++ +Y C C+ W E
Sbjct: 57 DIPTAAET-EAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105
>At1g47655.1 68414.m05294 Dof-type zinc finger domain-containing
protein
Length = 209
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/58 (24%), Positives = 20/58 (34%)
Frame = +1
Query: 391 THINPDVXSDPTLPXTKDHMCPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
T + P + P + CP+CN F Q Y C C+ WT+
Sbjct: 11 TRVQPSTAAYPPPNLAEPLPCPRCNSTTTKFCYYNNYNLAQPR---YYCKSCRRYWTQ 65
>At4g00940.1 68417.m00127 Dof-type zinc finger domain-containing
protein similar to DNA-binding protein DAG1/BBFa
GI:4581965 [Arabidopsis thaliana]
Length = 294
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Frame = +1
Query: 268 YPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHXVXELTHINPDVXSDPTLPXTKDH 447
Y D+ ++ + N Y + + M T I D T T+
Sbjct: 6 YHHHDQYQHQMMTSTNNNSYNTIVTTQPPPTTTTMDSTTATTMIMDDEKKLMTTMSTRPQ 65
Query: 448 M---CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
CP+CN F Q Y+C C+ WTE
Sbjct: 66 EPRNCPRCNSSNTKFCYYNNYSLAQPR---YLCKSCRRYWTE 104
>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
to chromomethylase CMT3 [Arabidopsis thaliana]
GI:14583092, GI:14647157
Length = 839
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 214 GGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDY 327
GGP GI N+L P ED+ NK LL +Y
Sbjct: 456 GGPPCQGISGHNRFRNLLDPLEDQKNKQLLVYMNIVEY 493
>At5g12330.3 68418.m01451 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 226
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 160 HFKINSKEMSAISLSRKDGGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNC 321
HFK ++ S + G G G CQ+C N +E K + CR C
Sbjct: 84 HFKSTNQTTVGTSSNNSGSGSGASGTATCQDCGNQA-KKECKQRR-----CRTC 131
>At5g12330.2 68418.m01450 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 320
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 160 HFKINSKEMSAISLSRKDGGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNC 321
HFK ++ S + G G G CQ+C N +E K + CR C
Sbjct: 84 HFKSTNQTTVGTSSNNSGSGSGASGTATCQDCGNQA-KKECKQRR-----CRTC 131
>At5g12330.1 68418.m01449 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 320
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 160 HFKINSKEMSAISLSRKDGGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNC 321
HFK ++ S + G G G CQ+C N +E K + CR C
Sbjct: 84 HFKSTNQTTVGTSSNNSGSGSGASGTATCQDCGNQA-KKECKQRR-----CRTC 131
>At4g24060.1 68417.m03456 Dof-type zinc finger domain-containing
protein Dof zinc finger protein - Oryza
sativa,PID:d1042342
Length = 342
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Frame = +1
Query: 403 PDVXSDPTLPXTKDHM--CPKCNHREAVFFQGQTXRAEQXMXLYYVCTXCKHXWTE 564
P V + KD CP+CN F Q Y C C+ WTE
Sbjct: 37 PSVGGERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPR---YFCKGCRRYWTE 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,029,678
Number of Sequences: 28952
Number of extensions: 189700
Number of successful extensions: 379
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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