Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K21
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)             103   5e-23
SB_18962| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.7)            30   1.1  
SB_11666| Best HMM Match : Arc (HMM E-Value=5)                         30   1.1  
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)               28   4.3  
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.3  
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)                   28   4.3  
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  27   5.7  
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)                   27   5.7  
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                27   7.6  
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)                   27   10.0 
SB_2428| Best HMM Match : ShTK (HMM E-Value=4.2e-21)                   27   10.0 
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)                   27   10.0 
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score =  103 bits (248), Expect = 5e-23
 Identities = 52/85 (61%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
 Frame = +1

Query: 190 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKK 363
           P KV KRMGK +  KRSK+KPFVKV NYNHLMPTRY+VD   +K    KD+ +DPA +KK
Sbjct: 50  PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109

Query: 364 LRFNTRVRFEXRYKSGKNKWFFXKL 438
                +   E RYKSGKNKWFF KL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134



 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 41/71 (57%), Positives = 54/71 (76%)
 Frame = +3

Query: 42  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE 221
           MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP +  +  GK+
Sbjct: 1   MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60

Query: 222 *NPQEVQDKAF 254
              +  + K F
Sbjct: 61  RTAKRSKVKPF 71


>SB_18962| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.7)
          Length = 351

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +2

Query: 35  LQDG*DNEAG*SSAGLKWPVRGSQGYRSQELRRRYLRQAVRACFRRWYRQVPPAKCTRGW 214
           L++G  +  G S+A L  P RG  G   + + R Y +  ++A  R +  + PP +  R +
Sbjct: 269 LENGGKHPLGSSTALLYLP-RGLAGRGRKGVEREYAQTKIKAAVRLYTNRDPPMEVLRKF 327

Query: 215 ERIKSTRGPR 244
           E     +G R
Sbjct: 328 ETRAEEKGRR 337


>SB_11666| Best HMM Match : Arc (HMM E-Value=5)
          Length = 235

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +2

Query: 35  LQDG*DNEAG*SSAGLKWPVRGSQGYRSQELRRRYLRQAVRACFRRWYRQVPPAKCTRGW 214
           L++G  +  G S+A L  P RG  G   + + R Y +  ++A  R +  + PP +  R +
Sbjct: 129 LENGGKHPLGSSTALLYLP-RGLAGRGRKGVEREYAQTKIKAAVRLYTNRDPPMEVLRKF 187

Query: 215 ERIKSTRGPR 244
           E     +G R
Sbjct: 188 ETRAEEKGRR 197


>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 280 SDYSLQPSRKALSWTSCG 227
           S Y ++P  K+L W SCG
Sbjct: 2   SSYRIKPKNKSLGWVSCG 19


>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1884

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +1

Query: 121  RITTKVPPTSRTGMLSSLVSTGTPGKVHKRMG-KNKIHKRSKIK-PFVKVVNYNHLMP-T 291
            +++  VPPT+   +L         G V  RMG   K+ +  K+  P + +++Y    P  
Sbjct: 1283 KVSEPVPPTTIFSLLLDTDEKAFQGNVKTRMGLLTKLAEYFKVTIPDIHIISYKPEDPGI 1342

Query: 292  RYTVDFSFEKFSAKDLKDPAKRK 360
            R+T  F F     K    PA  K
Sbjct: 1343 RFT--FGFSNVPTKPCDSPALAK 1363


>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
          Length = 245

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125


>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623


>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
          Length = 366

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVKNFSKV 86


>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 184 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIILPILEGY 29
           +S+ A+ + PY    +P+S FL ++   P   Y+PL      P  + L     Y
Sbjct: 13  VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFLQAPPSY 66


>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVENFSKV 86


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702


>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
          Length = 105

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 27  EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 131
           ++P+ ++GK  K G  V V+ GRY G   ++V+  D
Sbjct: 58  DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93


>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 328 AKDL--KDPAKRKKLRFNTRVRFEXRYKSGKNKWFFXKLRF 444
           +KDL  + P   +K  FN  +  E R++ G  K F+ +LRF
Sbjct: 2   SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42


>SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 178 STGTPGKVHKRMGKNKIHKRSKIKPFVKVVNYNHL 282
           STG PG  HKR G + +       P+++ V+Y H+
Sbjct: 142 STGNPGLEHKRSGHSLV-----FLPYMEGVSYRHV 171


>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 820

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 229 GFYSFPSSCALCRGYLSIPATKACPYGLSEVPSS 128
           G+   PS+     GY  +P+ K    G  EVPSS
Sbjct: 332 GYTGVPSNKKSGTGYTGVPSNKKPGTGYKEVPSS 365


>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
          Length = 248

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = -2

Query: 220 SFPSSCALCRGYLSIPATKACPYGLSEVPSS*FLTTIALRPAYRPLKTSTTL-PGFIILP 44
           SFPS+ A   GY     T A   G    P     TT A    YR   T+T    G+   P
Sbjct: 78  SFPSTTAHISGYKGTSTTTAYSSGYRGTP-----TTTAYSSGYRETSTTTAYSSGYRGTP 132

Query: 43  ILEGYS 26
               YS
Sbjct: 133 TTTAYS 138


>SB_2428| Best HMM Match : ShTK (HMM E-Value=4.2e-21)
          Length = 388

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 105 KAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE*NPQEVQDKAFREGCKL 272
           K +V+++ D+G    P  H+    I +  +    EDG + N    +D + +EG  L
Sbjct: 106 KVLVIEDDDDGNDGGPSDHSDKQVITQANKVLVTEDGDDGNDGGPKDHSDKEGTYL 161


>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
          Length = 724

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 368 RSFLRFAGSFRSFALNFSKL 309
           ++FL FA  +RSF  NFSK+
Sbjct: 6   QTFLGFASYYRSFVKNFSKV 25


>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 139 PPTSRTGMLSSLVSTGTPGKVHKRMG 216
           PPT+ T +L+++ ++G PG     MG
Sbjct: 460 PPTTMTTILTTIATSGPPGGAPSPMG 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,082,981
Number of Sequences: 59808
Number of extensions: 288962
Number of successful extensions: 783
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)