Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K20
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    29   0.58 
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.0  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    28   1.3  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   1.8  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   3.1  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   7.2  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 192 ILHWISCERKNDDIHQQLKELLQSNIAIXQEM 287
           ILHW    R  D  HQ  K L + N A+ +++
Sbjct: 342 ILHWSPSHRSEDFWHQNAKRLNEDNYALLKKL 373


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/55 (21%), Positives = 29/55 (52%)
 Frame = +1

Query: 199 IGFLASVKMMIFTNN*KSFCNPILQLXKKCVKKIRKSTTVIEEMQIQHYFKFNCA 363
           + +  S+ +M+  +    FC+  +    K V K+RK+ ++  ++  +H+  F+ A
Sbjct: 98  VEYRVSIGLMLLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINKRHFDHFSAA 152


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +3

Query: 207 SCERKNDDIHQQLKELLQSNIAIXQEMREENKEVN 311
           S +R+N+++ +QLK   + NI++ +++ E   E+N
Sbjct: 654 SLKRENEELREQLKVEHEENISMQKQLSELKGELN 688


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 225 DDIHQQLKELLQSNIAIXQEMREENKEVNNSN 320
           + +H  L+ L Q+N ++  E+ E+N E+N+ N
Sbjct: 532 EKLHDSLETLSQTNNSLQCEISEKNAELNSVN 563


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 213 ERKNDDIHQQLKELLQSNIAIXQEMREENKEVNNSN 320
           +R+N    Q +++L +SN+ +  +  E  K  +NSN
Sbjct: 550 KRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN 585


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 204 ISCERKNDDIHQQLKELLQSNIAIXQEMREENKEVNNSN*RNA 332
           I+ E  +D + QQL E ++   A   E+R ++++V   N RNA
Sbjct: 160 INKENADDSLIQQLYERIELQAA---ELRSKDEQVKELNARNA 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,039
Number of Sequences: 5004
Number of extensions: 35722
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)