Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K20
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40450.1 68418.m04905 expressed protein                             29   3.5  
At1g01780.1 68414.m00097 LIM domain-containing protein similar t...    27   8.2  

>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
 Frame = +3

Query: 192  ILHWISCERKNDDI----HQQLKEL-----LQSNIAIXQEMREENKEVNNSN*RN 329
            I H +S E KN+      H+  KE+      Q+NI + +E+REE KE+N  +  N
Sbjct: 2678 IKHEVSVEEKNNTSENIDHEAAKEIEQEEGKQTNI-VKEEIREEEKEINQESFNN 2731


>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 205

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 490 CIIIHLRYLSMNNYLSCLHHLN 555
           C + H  Y S+++ L C HH N
Sbjct: 136 CTLTHSSYASLDSVLYCRHHFN 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,148
Number of Sequences: 28952
Number of extensions: 163168
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)