Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K19
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.6  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.5  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    26   4.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    25   8.1  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 419 VNKPNPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRTTL 538
           VN+  P +  +    KSK + +   D +N +EKT++R T+
Sbjct: 10  VNEDEPELPPSVLSLKSKFESLSTGDLTNLDEKTAKRRTV 49


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 140 PNTLKLHATFYFTLLLCPSLMTYVRYYSNIVVSTH*VE*TTRSKCQTPKWKYS 298
           P+ + + A     LL CP+++ Y +   +  V T+     TR  CQ     YS
Sbjct: 82  PDVIAICANHSTVLLNCPTVLGYPKGRGSACVETNSSYGLTRGLCQIGSSNYS 134


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 413 KRVNKPNPNIQSTGGPKKSKIDVIEHNDDSNDE-EKTSQRT 532
           KR  +P         PK  K D  +H+ DSN++ E  +++T
Sbjct: 145 KRTARPKKPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKT 185


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 413 KRVNKPNPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRTTLSVQQQXENA 565
           KR + P P+ +S    KKSK    E + +S  E  +S+  + S + +  ++
Sbjct: 59  KRASSPEPSKKSVKKQKKSK-KKEESSSESESESSSSESESSSSESESSSS 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,192
Number of Sequences: 5004
Number of extensions: 30073
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)