Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K19
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_3673| Best HMM Match : CT20 (HMM E-Value=1.9)                       29   2.8  
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)                 29   3.7  
SB_25911| Best HMM Match : Gal_Lectin (HMM E-Value=8.1e-37)            28   6.4  
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)                      28   6.4  
SB_53715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_47633| Best HMM Match : Ank (HMM E-Value=1.7e-28)                   27   8.5  
SB_28107| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   8.5  

>SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 827

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 449 TGGPKKSKIDVIEHNDDSNDEEKTSQRTTLSVQQQXENATATYEL 583
           T G +  K+ V+E +D S DEE+  +  T+    + +   ATY++
Sbjct: 81  TDGEEAEKVVVVE-SDTSEDEEEEEEEETMESYNELDEPQATYDV 124


>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 410 TKRVNKPNPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQR 529
           +K+    N N+ + G  ++   + I+H +D   EEK  Q+
Sbjct: 26  SKKEASQNKNVSTQGHSERKAAEYIQHGEDKRKEEKIKQQ 65


>SB_3673| Best HMM Match : CT20 (HMM E-Value=1.9)
          Length = 183

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 431 NPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRTTLSVQQQXENATATY 577
           NP +     PKK + + +E ++D +D E+ S      +    E+   TY
Sbjct: 134 NPTLSWYRHPKKPRCESVEDDEDKHDLERPSVADDTEIPYPTEHLRETY 182


>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
          Length = 321

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +2

Query: 392 QQVVLPTKRVNKPNPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRTTLSVQQQXENATA 571
           Q VV+  ++    NP IQ T G  K K    +  ++    +  S R+ +S       ATA
Sbjct: 43  QTVVIRKEKKTGFNPMIQKTEGFAKEKG---QDEEEKIHVDFKSTRSAMSAGPTDAGATA 99

Query: 572 TYEL 583
           TYEL
Sbjct: 100 TYEL 103


>SB_25911| Best HMM Match : Gal_Lectin (HMM E-Value=8.1e-37)
          Length = 413

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 434 PNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRTTLSVQQQ 553
           P +  T    K  I  +  +DD NDE+   +R  L +  +
Sbjct: 42  PEVDETSKEMKEDIPTVVEDDDENDEDGDDRRRNLGLSNK 81


>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
          Length = 623

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 NPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRTT 535
           +P+ ++TG  K  K DV+E + D +D +K S   T
Sbjct: 153 SPSTENTGSTKSDKDDVVEISSD-DDSDKISANPT 186


>SB_53715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 431 NPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRTT 535
           N + QS+  PK       E+  D ND+EKTS R T
Sbjct: 57  NSSYQSSLTPKSKMAAAGENIIDLNDDEKTSLRVT 91


>SB_47633| Best HMM Match : Ank (HMM E-Value=1.7e-28)
          Length = 353

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 455 GPKKSKIDVIEHNDDSNDEEK-TSQRTTLS 541
           GP+     V+E+ND   +EE  +SQ TT S
Sbjct: 80  GPRVQTYSVLENNDSDEEEEPGSSQETTAS 109


>SB_28107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1037

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 386 QSPSCFSLXNWKFYVFCHPY 327
           Q      L  W+FY  CHPY
Sbjct: 381 QLTGAIQLTEWEFYEACHPY 400


>SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 140 PNTLKLHATFYFTLLLCPSLMTYVRYY 220
           PN L L+ATF F L L   +M Y R Y
Sbjct: 177 PNYLHLNATFSFFLPLSFMVMMYARIY 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,037,396
Number of Sequences: 59808
Number of extensions: 211073
Number of successful extensions: 824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)