Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K19
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing p...    30   1.3  
At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein ...    28   4.0  
At1g79970.1 68414.m09349 expressed protein                             28   4.0  
At2g39855.2 68415.m04896 expressed protein                             27   6.9  
At2g39855.1 68415.m04895 expressed protein                             27   6.9  
At5g17910.1 68418.m02100 expressed protein                             27   9.1  
At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger) fa...    27   9.1  

>At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 372

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 455 GPKKSKIDVIEHNDDSNDEEKTSQR 529
           G +K K++  E ND+SN+E+ TS R
Sbjct: 343 GKQKMKMETDEDNDESNEEKATSSR 367


>At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 271

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 446 STGGPKKSKIDVIEHNDDSNDEEKTSQRTTL 538
           S   P+K+K+DV E   + +DE+ + + T +
Sbjct: 2   SNPNPEKTKVDVTEEEKEESDEQWSDEETNM 32


>At1g79970.1 68414.m09349 expressed protein
          Length = 240

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 464 KSKIDVIEHNDDSNDEEKTSQRTTLSVQQQXENATA 571
           K  I++ E  DDS   EK      +S +++ ENA A
Sbjct: 186 KEDIEIHEEGDDSFSTEKPQNHREVSAEKESENAGA 221


>At2g39855.2 68415.m04896 expressed protein
          Length = 142

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 409 NEKGEQTKSKHTVYRRSEEIQN*CN 483
           NE+GE++K+K     +SEE Q  CN
Sbjct: 71  NERGERSKNKERKSYQSEETQPPCN 95


>At2g39855.1 68415.m04895 expressed protein
          Length = 151

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 409 NEKGEQTKSKHTVYRRSEEIQN*CN 483
           NE+GE++K+K     +SEE Q  CN
Sbjct: 71  NERGERSKNKERKSYQSEETQPPCN 95


>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 398  VVLPTKRVNKPNPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRT 532
            VV+PTK     N  +      +K+K +    N D+N +   S+ T
Sbjct: 1284 VVIPTKAAGPSNVTLSDEVVTEKAKAETTASNTDANVQSPESKET 1328


>At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger)
           family protein RING-H2 finger protein RHA1a, Arabidopsis
           thaliana,AF078683
          Length = 236

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +2

Query: 419 VNKPNPNIQSTGGPKKSKIDVIEHNDDSNDEEKTSQRTTLSVQQQXENATAT 574
           +   N    ST    +S  + I H DD  +  + SQ  +   ++   N+  T
Sbjct: 175 IENSNGGEASTQPDSQSATEAISHTDDVEEGNRDSQEVSKETEENDRNSVGT 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,022,152
Number of Sequences: 28952
Number of extensions: 139387
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)