Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K17
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    29   0.77 
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.4  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   7.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   9.5  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       25   9.5  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 110 YFYKYFCRSKFVNSFYSVSYIKKPVCRVNTGRKINK 3
           YF  ++ +++   SF+SV YI K   ++N  R  N+
Sbjct: 393 YFVPHYIQNRMSQSFFSVGYIAKSTFKLNPLRLRNQ 428


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 588 GDWFVMFYGAACVECQRL 641
           G WF+ +Y  +C  C+RL
Sbjct: 43  GTWFIKYYLPSCGACKRL 60


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 110 YFYKYFCRSKFVNSFYSVSY 51
           YF  Y+  S F+ SF  VSY
Sbjct: 362 YFMSYYIFSNFLTSFLQVSY 381


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 378 TVNSHLARLYNPSKEPXLIFYRHGVALLYS 467
           T +  + +  N ++ P L+  RHGVA  YS
Sbjct: 271 TDDEKVIKTLNVTRLPHLVAIRHGVAFSYS 300


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 611 IKHDKPISCCCTSSCLCQMLKYFXC*LFYSWC 516
           + HDK    CC S C+ Q+           WC
Sbjct: 201 VNHDKSTRICCFSPCIEQIQHSAEALRELGWC 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,568
Number of Sequences: 5004
Number of extensions: 35072
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)