Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K17
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0195 - 23488490-23488891,23489016-23489243,23489348-234894...    29   4.2  
08_02_0593 + 19078264-19078609,19078724-19082256                       28   7.4  
08_01_0044 + 301981-302826,302972-303580                               27   9.8  
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    27   9.8  

>04_04_0195 -
           23488490-23488891,23489016-23489243,23489348-23489481,
           23489685-23489899,23490049-23490142,23490293-23490526,
           23490643-23490736
          Length = 466

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 110 YFYKYFCRSKFVNSFYSVSYIKKPVCRVN 24
           +F + +  S+FVN F++V     P CRVN
Sbjct: 346 FFAERYPASRFVNDFHTVKLPLLPPCRVN 374


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 635  LAFNTSCPIKHDKPISCCCTSSCLC 561
            + FN++  I HDKP+   C  SC C
Sbjct: 1079 IPFNSNGAIVHDKPLIFECGPSCRC 1103


>08_01_0044 + 301981-302826,302972-303580
          Length = 484

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 339 EDFKKHLNAMSVXTVNSHLARLYNPSKEP---XLIFYRHGVALLYSGEADENEIYGFF 503
           + F+K   A++V  +NSH  + Y P++E     +I    G A +     D  E+   F
Sbjct: 106 DHFRKVRKAVTVHLLNSHKVQAYRPAREEEVRLVIAKLRGAAAMAGAPVDMTELLHSF 163


>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
            21556524-21556620,21557113-21557141,21557620-21557781,
            21557981-21558061,21558156-21558314,21558394-21558510,
            21558598-21558666,21558753-21558831,21560884-21561050,
            21561109-21561229,21561522-21561649,21562293-21562361,
            21562408-21562539,21562619-21562991,21563274-21563398,
            21563500-21563655,21563785-21564198,21564634-21564691,
            21566522-21566648,21568047-21568305,21569005-21569104,
            21569231-21569317,21569454-21569692,21569914-21569999,
            21570409-21570532,21571111-21574332
          Length = 2444

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 273  VLFTKQNCETCXKLEQHVQSLQEDFKKHL-NAMSVXTVNSHLAR 401
            V+ TKQ   T   LE +  S+ ++ KKH  + +S+     HLA+
Sbjct: 2141 VMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAGKHLAK 2184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,228
Number of Sequences: 37544
Number of extensions: 175452
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)