Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K17
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical pr...    50   2e-06
AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical ...    32   0.31 

>U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical
           protein D2092.4 protein.
          Length = 363

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
 Frame = +3

Query: 285 KQNCETCXKLEQHVQSLQEDFKKHLNAMSVXTVNSHLARLYNPSKEPXLIFYRHGVALLY 464
           K  C TC +    V+ + +D +       V T +  +AR    +  P L++YR    +LY
Sbjct: 104 KVPCPTCTEALSEVEEIDDDIEATGYVQVVKTNDRSVARELGINVFPSLVYYRRKNPILY 163

Query: 465 SGEADENE-IYGFFXKNQTPAVKXLTXKIFEHLTQA-ATGATTGDWFVMFYGA 617
            G+  ++E +  +   ++  A   LT   FE  T + +    + DWFVMFY A
Sbjct: 164 DGDFKDSETLLRWLRAHEEVATWDLTDDTFESRTDSHSPDEGSIDWFVMFYDA 216


>AC006834-9|AAL11490.1|  447|Caenorhabditis elegans Hypothetical
           protein ZK973.11 protein.
          Length = 447

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 588 GDWFVMFYGAACVECQRLHAV 650
           G WFV FY   C  C+RLH V
Sbjct: 44  GMWFVEFYAPWCAHCKRLHPV 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,654,394
Number of Sequences: 27780
Number of extensions: 194767
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)