Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K17
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa...    28   4.7  
At1g35620.1 68414.m04425 thioredoxin family protein similar to S...    28   4.7  

>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 506

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 285 KQNCETCXKLEQHVQSLQEDFKKHLNAMSVXTVNSHLARL 404
           K+N E   KL Q  + L+ED  K   A+   +   HL +L
Sbjct: 121 KENVEVSDKLHQCNEQLKEDKVKRWEALQEISTTQHLLKL 160


>At1g35620.1 68414.m04425 thioredoxin family protein similar to
           SP|Q43116 Protein disulfide isomerase precursor (PDI)
           (EC 5.3.4.1) {Ricinus communis}; contains Pfam profile
           PF00085: Thioredoxin
          Length = 440

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
 Frame = +3

Query: 294 CETCXKLEQHVQSLQEDFKKHLNAMSVXTVN----SHLARLYNPSKEPXLIFYRHGVALL 461
           C  C +L   + +      K    + +  +N    S LAR       P L+ Y HGV + 
Sbjct: 61  CGHCKRLNPELDAAAPILAKLKQPIVIAKLNADKYSRLARKIEIDAFPTLMLYNHGVPME 120

Query: 462 YSGEADENEIYGFFXKNQTPAVKXL 536
           Y G    + +  +  K   P V  L
Sbjct: 121 YYGPRKADLLVRYLKKFVAPDVAVL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,464,589
Number of Sequences: 28952
Number of extensions: 161156
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)