Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K15
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   5.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    24   7.7  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    24   7.7  

>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 268 CKGELFTRWTSITCYIPNI 212
           C G LF RW S   Y  NI
Sbjct: 229 CSGSLFPRWKSKGFYAKNI 247


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 89  IVGLTKKEKLLHPRDSVY 36
           ++G  ++  LLHP DS Y
Sbjct: 484 LLGTNRESSLLHPNDSFY 501


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 95  LKSVICTLIRYPPKAGISWLIREKKTKTTK 184
           L  VI    RY P AG+S L+ +   KTT+
Sbjct: 45  LSVVINAGSRYQPDAGVSHLLEKFAFKTTE 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,358
Number of Sequences: 5004
Number of extensions: 21059
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)