Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K13
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.4  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 336 VTVPTRKGIKETQNVKSQDIKSG 404
           VTVP  KG+  + NV S+ I +G
Sbjct: 82  VTVPRYKGVPSSLNVISEKIGNG 104


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 59  NEINKIRQNVALLAARKVIQ*HL 127
           NEI ++++N  LL  R++ + HL
Sbjct: 222 NEITRLQENSPLLDLRQLQELHL 244


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 215 VQEKSVSVHYSHTVGILHCD 156
           +Q+   SVH+ H  G++H D
Sbjct: 15  IQQILESVHHCHHNGVVHRD 34


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 261 SPALALLTHQEDRSHRPRKERICSL 187
           S  L L  H+E +  +P    +C+L
Sbjct: 382 STKLTLKRHKEQQHFQPLNSAVCAL 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,438
Number of Sequences: 438
Number of extensions: 2509
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)