Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K07
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...    60   2e-10
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   3.1  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   4.0  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    26   5.3  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.1  

>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 25/71 (35%), Positives = 42/71 (59%)
 Frame = +3

Query: 363 FIGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIPPDWMD 542
           F+  N  I+I P+ T D++ L+       +      VPLWLA+ LK++    ++PP+WM+
Sbjct: 18  FLAGNEYINIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARIVPPEWME 77

Query: 543 VEXLENIKQEE 575
           +  LENI+ +E
Sbjct: 78  IGKLENIRDDE 88


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 445 GPNSPHIKYILSWVKFGVILIIRFS 371
           GP SP  +   +W+K G++LI+  S
Sbjct: 15  GPESPSRRNWKTWIKHGILLILVLS 39


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 623  PPYSVHLASL*RX*TLFLLFNILQXFH 543
            PP S+ LAS+     + LLF++LQ F+
Sbjct: 1516 PPSSISLASIDESFMIVLLFDLLQQFN 1542


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 350 FIYHIFLGILYYDLVTKTFKSCLIL-IYTLI 261
           F Y +F  I  Y L+  T+K CL+  I TL+
Sbjct: 50  FGYRVFYRISKYSLIDLTYKLCLLCGIVTLL 80


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 369 GENRIISITPNFTHDKI 419
           G+ + ++ITPNFTH  I
Sbjct: 143 GKEKWVTITPNFTHTPI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,219
Number of Sequences: 5004
Number of extensions: 44046
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)