Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K07
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4360| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_69| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   7.5  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.9  

>SB_4360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 519 VIPPDWMDVEXLENIKQEEKRSXSS-QRCQMNTIWWK 626
           +  P+ +D +  +N+  E   +    Q CQM T WW+
Sbjct: 109 ICSPESLDTDNCQNLCCERGYTTKKLQTCQMKTCWWE 145


>SB_69| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 410 MGKVWCYTDYPILTNKLYHVFIYHI-FLGILYYDLVTKTFK 291
           +G+V CY  YP LT   Y V ++ I  +    Y LV K F+
Sbjct: 187 LGEVMCYYGYP-LTEVFYAVSVWSITAIAAERYQLVRKNFQ 226


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 387  SITPNFTHDKIYLICGEFG-PFRAGL 461
            S+TPN+  D+ +  CG FG P   GL
Sbjct: 2539 SLTPNYDRDRKFGFCGGFGIPVTRGL 2564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,283
Number of Sequences: 59808
Number of extensions: 313788
Number of successful extensions: 722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)