Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_K07
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 459 LPVNVPLWLAIMLKQKQKCHVIPPDWMDVEXLENIKQEEK 578
           LPV   LW  I L   Q  H+     ++ E +EN++  EK
Sbjct: 52  LPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQANEK 91


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 459 LPVNVPLWLAIMLKQKQKCHVIPPDWMDVEXLENIKQEEK 578
           LPV   LW  I L   Q  H+     ++ E +EN++  EK
Sbjct: 90  LPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQANEK 129


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 421 YILSWVKFGVILII 380
           Y+LSW  +GV+ +I
Sbjct: 283 YVLSWTPYGVMSMI 296


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 400 TLPMIKYT*YAVNLVRFVLVYL*TYHSGWLS 492
           T P I    +  N+++FV V   TY   W S
Sbjct: 498 TTPAICVGVFTFNIIKFVPVKYLTYEYPWWS 528


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 400 TLPMIKYT*YAVNLVRFVLVYL*TYHSGWLS 492
           T P I    +  N+++FV V   TY   W S
Sbjct: 551 TTPAICVGVFTFNIIKFVPVKYLTYEYPWWS 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,346
Number of Sequences: 438
Number of extensions: 2985
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)